Results 1 - 20 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 217720 | 0.66 | 0.867685 |
Target: 5'- aGGuCCGCUucagGGGCGGcAGgGAcCGCGAc -3' miRNA: 3'- aCC-GGCGA----CCCGCUcUCgCUuGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130589 | 0.66 | 0.845563 |
Target: 5'- aGGCCGCggccucgGaGGCGgaGGAGaCGAagagcccgGCGCGAc -3' miRNA: 3'- aCCGGCGa------C-CCGC--UCUC-GCU--------UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 190014 | 0.66 | 0.845563 |
Target: 5'- uUGGCCGC-GGuCGAG-GCcGACAUGAu -3' miRNA: 3'- -ACCGGCGaCCcGCUCuCGcUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 226585 | 0.66 | 0.845563 |
Target: 5'- cGGCCaGgaGGGCGcggcccgggggaGGAGgGGACGgCGAc -3' miRNA: 3'- aCCGG-CgaCCCGC------------UCUCgCUUGU-GCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 114258 | 0.66 | 0.845563 |
Target: 5'- cGGCUGCgcgaGGCGAGAauccuCGAacgGCGCGAu -3' miRNA: 3'- aCCGGCGac--CCGCUCUc----GCU---UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 107726 | 0.66 | 0.853121 |
Target: 5'- aGGUCGCagaggUGGGUGcgguGGcAGCGGACGCa- -3' miRNA: 3'- aCCGGCG-----ACCCGC----UC-UCGCUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 220024 | 0.66 | 0.853121 |
Target: 5'- aGGCCGCUccgucucgGGGUccGGGCGAucucgACAUGGc -3' miRNA: 3'- aCCGGCGA--------CCCGcuCUCGCU-----UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 186229 | 0.66 | 0.853121 |
Target: 5'- cGGCCGCcaccgaGGGCGAGGuccCGGuccucgguCACGAg -3' miRNA: 3'- aCCGGCGa-----CCCGCUCUc--GCUu-------GUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 205054 | 0.66 | 0.856093 |
Target: 5'- cGGCCGC-GGGcCcggaccuacuggcugGAGAGCGGcgGCGAu -3' miRNA: 3'- aCCGGCGaCCC-G---------------CUCUCGCUugUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 90553 | 0.66 | 0.860496 |
Target: 5'- gGaGCgGgaGGaCGAGGGCGAGgGCGAc -3' miRNA: 3'- aC-CGgCgaCCcGCUCUCGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 198009 | 0.66 | 0.860496 |
Target: 5'- cGGgCGaCggacggGGGCGAGGgacGCGcGCGCGAg -3' miRNA: 3'- aCCgGC-Ga-----CCCGCUCU---CGCuUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 131999 | 0.66 | 0.860496 |
Target: 5'- gGGCCGCcccGGGCGccGGGgGGACcucgGCGGc -3' miRNA: 3'- aCCGGCGa--CCCGCu-CUCgCUUG----UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 133008 | 0.66 | 0.860496 |
Target: 5'- aUGGCCGCcgacggagaacUGGGagaagaCGAcGAGCGAGuCGCGc -3' miRNA: 3'- -ACCGGCG-----------ACCC------GCU-CUCGCUU-GUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 108493 | 0.66 | 0.860496 |
Target: 5'- cGGUCGUcaaGGGCGAGGcCGGGCcCGGc -3' miRNA: 3'- aCCGGCGa--CCCGCUCUcGCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 149813 | 0.66 | 0.860496 |
Target: 5'- aUGGUCGaggacagcGaGGCgGAGAGCGAcccGCGCGAc -3' miRNA: 3'- -ACCGGCga------C-CCG-CUCUCGCU---UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 153123 | 0.66 | 0.860496 |
Target: 5'- cGGUgGCgacGGGCGGGAcggGCGAuccggguCGCGGu -3' miRNA: 3'- aCCGgCGa--CCCGCUCU---CGCUu------GUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 137889 | 0.66 | 0.860496 |
Target: 5'- -cGCCGCcGGcgacGCGGGAGaccCGGACGCGGc -3' miRNA: 3'- acCGGCGaCC----CGCUCUC---GCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 41666 | 0.66 | 0.867685 |
Target: 5'- cGGUCGagagacCUGGGCGAGgaaAGCGAGaaucagGCGGg -3' miRNA: 3'- aCCGGC------GACCCGCUC---UCGCUUg-----UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 156438 | 0.66 | 0.867685 |
Target: 5'- cGGCCggGCUGGGgggcucCGGGGGCG-GCGgGGg -3' miRNA: 3'- aCCGG--CGACCC------GCUCUCGCuUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 224046 | 0.66 | 0.867685 |
Target: 5'- gGGCCGCcgGGGaCGAcucgucGGGCGucUGCGAc -3' miRNA: 3'- aCCGGCGa-CCC-GCU------CUCGCuuGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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