Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 171056 | 0.66 | 0.939519 |
Target: 5'- --aCGCcGC-CGUCCUucaCGAGAAGAUGa -3' miRNA: 3'- ucaGCGaCGuGCAGGG---GCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 21918 | 0.66 | 0.932935 |
Target: 5'- cGUCGCcGCuACGgagggcgacgacgUgCCGAGAGGACGa -3' miRNA: 3'- uCAGCGaCG-UGCa------------GgGGCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 15288 | 0.66 | 0.934861 |
Target: 5'- uAGUCggGCUGCAggaagagcgucuCGUCgCCCaggcggGAGggGACGa -3' miRNA: 3'- -UCAG--CGACGU------------GCAG-GGG------CUCuuCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 107145 | 0.66 | 0.943957 |
Target: 5'- gGG-CGCccccaucaGCGCGUUuccgCCCGGGAGGGCGu -3' miRNA: 3'- -UCaGCGa-------CGUGCAG----GGGCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 24788 | 0.66 | 0.948177 |
Target: 5'- gGGUCcggGCGCG-CCCCccGAGGACGg -3' miRNA: 3'- -UCAGcgaCGUGCaGGGGcuCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 13408 | 0.66 | 0.934861 |
Target: 5'- --gCGCUGCGCcUCCCUGuG-GGACGc -3' miRNA: 3'- ucaGCGACGUGcAGGGGCuCuUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 95174 | 0.66 | 0.934861 |
Target: 5'- -cUCGCguagGCggagaGCG-CCCgCGAGAGGACGu -3' miRNA: 3'- ucAGCGa---CG-----UGCaGGG-GCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 67957 | 0.66 | 0.943957 |
Target: 5'- gGGUCGCgccgGUucgccgugGCGUCCgCCGgaGGAGGGCc -3' miRNA: 3'- -UCAGCGa---CG--------UGCAGG-GGC--UCUUCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 124188 | 0.66 | 0.955972 |
Target: 5'- ---gGCUGCuCGUCCgCCGGGGacagAGGCa -3' miRNA: 3'- ucagCGACGuGCAGG-GGCUCU----UCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 167454 | 0.66 | 0.934861 |
Target: 5'- cGUcCGgaGCAuCGUCUCCGAGGucgucGACGu -3' miRNA: 3'- uCA-GCgaCGU-GCAGGGGCUCUu----CUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 89808 | 0.66 | 0.934861 |
Target: 5'- gGGUCGCcG-AUGaCgCCGAGAGGACGu -3' miRNA: 3'- -UCAGCGaCgUGCaGgGGCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 204808 | 0.66 | 0.955972 |
Target: 5'- aGGUcCGCgucccggggGCGCGgcggcUCCguCCGGGAGGACGa -3' miRNA: 3'- -UCA-GCGa--------CGUGC-----AGG--GGCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 107605 | 0.66 | 0.943957 |
Target: 5'- cGGcUCGCUGaCgggcuccaggACGUCCCCGcggccgccggGGAAGACc -3' miRNA: 3'- -UC-AGCGAC-G----------UGCAGGGGC----------UCUUCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 205621 | 0.66 | 0.947765 |
Target: 5'- cGUCGCcGC-CGUCcuuccugCCCGcGGggGACGc -3' miRNA: 3'- uCAGCGaCGuGCAG-------GGGC-UCuuCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 207779 | 0.66 | 0.948177 |
Target: 5'- uGGUUGCgggacgGCGuCGUCuCCCGGccGGACGa -3' miRNA: 3'- -UCAGCGa-----CGU-GCAG-GGGCUcuUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 209516 | 0.66 | 0.948177 |
Target: 5'- --cCGCUGuUACGUCUacagCGAGGAGACc -3' miRNA: 3'- ucaGCGAC-GUGCAGGg---GCUCUUCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 125032 | 0.66 | 0.95179 |
Target: 5'- --cCGCUGCGCGaggucccUCCCCGccgcuccagccgGGAcgGGACGu -3' miRNA: 3'- ucaGCGACGUGC-------AGGGGC------------UCU--UCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 130340 | 0.66 | 0.955972 |
Target: 5'- uAG-CGCacauggGCACGaCCCCGGGcGGACc -3' miRNA: 3'- -UCaGCGa-----CGUGCaGGGGCUCuUCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 92403 | 0.66 | 0.955972 |
Target: 5'- cAGUuccCGCUGCugGauccgaUCCCCGAGGAc--- -3' miRNA: 3'- -UCA---GCGACGugC------AGGGGCUCUUcugc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 94278 | 0.66 | 0.955972 |
Target: 5'- -cUCGCUG-GCGUCCacggCCGGGGAG-CGg -3' miRNA: 3'- ucAGCGACgUGCAGG----GGCUCUUCuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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