miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9224 3' -56.6 NC_002512.2 + 171056 0.66 0.939519
Target:  5'- --aCGCcGC-CGUCCUucaCGAGAAGAUGa -3'
miRNA:   3'- ucaGCGaCGuGCAGGG---GCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 21918 0.66 0.932935
Target:  5'- cGUCGCcGCuACGgagggcgacgacgUgCCGAGAGGACGa -3'
miRNA:   3'- uCAGCGaCG-UGCa------------GgGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 15288 0.66 0.934861
Target:  5'- uAGUCggGCUGCAggaagagcgucuCGUCgCCCaggcggGAGggGACGa -3'
miRNA:   3'- -UCAG--CGACGU------------GCAG-GGG------CUCuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 107145 0.66 0.943957
Target:  5'- gGG-CGCccccaucaGCGCGUUuccgCCCGGGAGGGCGu -3'
miRNA:   3'- -UCaGCGa-------CGUGCAG----GGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 24788 0.66 0.948177
Target:  5'- gGGUCcggGCGCG-CCCCccGAGGACGg -3'
miRNA:   3'- -UCAGcgaCGUGCaGGGGcuCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 13408 0.66 0.934861
Target:  5'- --gCGCUGCGCcUCCCUGuG-GGACGc -3'
miRNA:   3'- ucaGCGACGUGcAGGGGCuCuUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 95174 0.66 0.934861
Target:  5'- -cUCGCguagGCggagaGCG-CCCgCGAGAGGACGu -3'
miRNA:   3'- ucAGCGa---CG-----UGCaGGG-GCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 67957 0.66 0.943957
Target:  5'- gGGUCGCgccgGUucgccgugGCGUCCgCCGgaGGAGGGCc -3'
miRNA:   3'- -UCAGCGa---CG--------UGCAGG-GGC--UCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 124188 0.66 0.955972
Target:  5'- ---gGCUGCuCGUCCgCCGGGGacagAGGCa -3'
miRNA:   3'- ucagCGACGuGCAGG-GGCUCU----UCUGc -5'
9224 3' -56.6 NC_002512.2 + 167454 0.66 0.934861
Target:  5'- cGUcCGgaGCAuCGUCUCCGAGGucgucGACGu -3'
miRNA:   3'- uCA-GCgaCGU-GCAGGGGCUCUu----CUGC- -5'
9224 3' -56.6 NC_002512.2 + 89808 0.66 0.934861
Target:  5'- gGGUCGCcG-AUGaCgCCGAGAGGACGu -3'
miRNA:   3'- -UCAGCGaCgUGCaGgGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 204808 0.66 0.955972
Target:  5'- aGGUcCGCgucccggggGCGCGgcggcUCCguCCGGGAGGACGa -3'
miRNA:   3'- -UCA-GCGa--------CGUGC-----AGG--GGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 107605 0.66 0.943957
Target:  5'- cGGcUCGCUGaCgggcuccaggACGUCCCCGcggccgccggGGAAGACc -3'
miRNA:   3'- -UC-AGCGAC-G----------UGCAGGGGC----------UCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 205621 0.66 0.947765
Target:  5'- cGUCGCcGC-CGUCcuuccugCCCGcGGggGACGc -3'
miRNA:   3'- uCAGCGaCGuGCAG-------GGGC-UCuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 207779 0.66 0.948177
Target:  5'- uGGUUGCgggacgGCGuCGUCuCCCGGccGGACGa -3'
miRNA:   3'- -UCAGCGa-----CGU-GCAG-GGGCUcuUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 209516 0.66 0.948177
Target:  5'- --cCGCUGuUACGUCUacagCGAGGAGACc -3'
miRNA:   3'- ucaGCGAC-GUGCAGGg---GCUCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 125032 0.66 0.95179
Target:  5'- --cCGCUGCGCGaggucccUCCCCGccgcuccagccgGGAcgGGACGu -3'
miRNA:   3'- ucaGCGACGUGC-------AGGGGC------------UCU--UCUGC- -5'
9224 3' -56.6 NC_002512.2 + 130340 0.66 0.955972
Target:  5'- uAG-CGCacauggGCACGaCCCCGGGcGGACc -3'
miRNA:   3'- -UCaGCGa-----CGUGCaGGGGCUCuUCUGc -5'
9224 3' -56.6 NC_002512.2 + 92403 0.66 0.955972
Target:  5'- cAGUuccCGCUGCugGauccgaUCCCCGAGGAc--- -3'
miRNA:   3'- -UCA---GCGACGugC------AGGGGCUCUUcugc -5'
9224 3' -56.6 NC_002512.2 + 94278 0.66 0.955972
Target:  5'- -cUCGCUG-GCGUCCacggCCGGGGAG-CGg -3'
miRNA:   3'- ucAGCGACgUGCAGG----GGCUCUUCuGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.