Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 34471 | 1.09 | 0.004266 |
Target: 5'- cAGUCGCUGCACGUCCCCGAGAAGACGa -3' miRNA: 3'- -UCAGCGACGUGCAGGGGCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 10325 | 0.78 | 0.39629 |
Target: 5'- cGUCGCa-CACGUCCCCGGcGAAGACc -3' miRNA: 3'- uCAGCGacGUGCAGGGGCU-CUUCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 213549 | 0.76 | 0.456004 |
Target: 5'- cGUCuGCUGCGCGggguccgCCUCGAGAGGAgGa -3' miRNA: 3'- uCAG-CGACGUGCa------GGGGCUCUUCUgC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 134141 | 0.76 | 0.464928 |
Target: 5'- cGUCGCggcGCGCGUCCcggCCGGcGggGACGg -3' miRNA: 3'- uCAGCGa--CGUGCAGG---GGCU-CuuCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 74280 | 0.76 | 0.473941 |
Target: 5'- cAGgCGCcGCACGUCCCCGugguccucgacGGAGGACa -3' miRNA: 3'- -UCaGCGaCGUGCAGGGGC-----------UCUUCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 102820 | 0.76 | 0.483041 |
Target: 5'- aAG-CGCagaagacGCACGUCCgCGAGGAGACGg -3' miRNA: 3'- -UCaGCGa------CGUGCAGGgGCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 116759 | 0.75 | 0.539254 |
Target: 5'- --cCGC-GCGCGUCUCCGAGGAGAgGc -3' miRNA: 3'- ucaGCGaCGUGCAGGGGCUCUUCUgC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 29240 | 0.75 | 0.539254 |
Target: 5'- gGGUCGC-GCAgucCGUCCuCCGAcGggGACGa -3' miRNA: 3'- -UCAGCGaCGU---GCAGG-GGCU-CuuCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 155876 | 0.74 | 0.558502 |
Target: 5'- --aCGCUGUuCGUCCCCGAcggcgggcgcGggGACGa -3' miRNA: 3'- ucaGCGACGuGCAGGGGCU----------CuuCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 147465 | 0.74 | 0.587714 |
Target: 5'- uGUCGCUGCugGUCUUCGcGcGGGCGc -3' miRNA: 3'- uCAGCGACGugCAGGGGCuCuUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 154499 | 0.74 | 0.59752 |
Target: 5'- uGGUCGUggGCGCGUCCUCGGGcgauGACu -3' miRNA: 3'- -UCAGCGa-CGUGCAGGGGCUCuu--CUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 171504 | 0.73 | 0.627051 |
Target: 5'- gAGUCGCUgGC-CGUCaCCCucGAGGACGu -3' miRNA: 3'- -UCAGCGA-CGuGCAG-GGGcuCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 81819 | 0.73 | 0.636911 |
Target: 5'- --gCGCcGCGagGUCUCCGAGAGGACGa -3' miRNA: 3'- ucaGCGaCGUg-CAGGGGCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 93982 | 0.72 | 0.686012 |
Target: 5'- uGUCGCUGCGCGUCCgCGAac--GCGu -3' miRNA: 3'- uCAGCGACGUGCAGGgGCUcuucUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 106960 | 0.72 | 0.695739 |
Target: 5'- aAGUUGCaGCGCucgcgcucGUCCCCGuAGAAGGCc -3' miRNA: 3'- -UCAGCGaCGUG--------CAGGGGC-UCUUCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 196166 | 0.72 | 0.695739 |
Target: 5'- cGGUCGaCgagGgGCGagCCCGAGggGGCGa -3' miRNA: 3'- -UCAGC-Ga--CgUGCagGGGCUCuuCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 214804 | 0.72 | 0.704451 |
Target: 5'- uGGUCGCggagGUcCGUCUCCGAGAGucgcgguGACGa -3' miRNA: 3'- -UCAGCGa---CGuGCAGGGGCUCUU-------CUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 25607 | 0.72 | 0.705417 |
Target: 5'- aAGUCGC-GCACGUCC---AGGAGGCGg -3' miRNA: 3'- -UCAGCGaCGUGCAGGggcUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 214207 | 0.72 | 0.715037 |
Target: 5'- --cCGCUGCGCccgcugCCCCGGGAcgucAGGCGg -3' miRNA: 3'- ucaGCGACGUGca----GGGGCUCU----UCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 3757 | 0.71 | 0.724591 |
Target: 5'- gAGUgGaaGUGCGagCCCGAGGAGACGg -3' miRNA: 3'- -UCAgCgaCGUGCagGGGCUCUUCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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