miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9224 3' -56.6 NC_002512.2 + 34471 1.09 0.004266
Target:  5'- cAGUCGCUGCACGUCCCCGAGAAGACGa -3'
miRNA:   3'- -UCAGCGACGUGCAGGGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 10325 0.78 0.39629
Target:  5'- cGUCGCa-CACGUCCCCGGcGAAGACc -3'
miRNA:   3'- uCAGCGacGUGCAGGGGCU-CUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 213549 0.76 0.456004
Target:  5'- cGUCuGCUGCGCGggguccgCCUCGAGAGGAgGa -3'
miRNA:   3'- uCAG-CGACGUGCa------GGGGCUCUUCUgC- -5'
9224 3' -56.6 NC_002512.2 + 134141 0.76 0.464928
Target:  5'- cGUCGCggcGCGCGUCCcggCCGGcGggGACGg -3'
miRNA:   3'- uCAGCGa--CGUGCAGG---GGCU-CuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 74280 0.76 0.473941
Target:  5'- cAGgCGCcGCACGUCCCCGugguccucgacGGAGGACa -3'
miRNA:   3'- -UCaGCGaCGUGCAGGGGC-----------UCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 102820 0.76 0.483041
Target:  5'- aAG-CGCagaagacGCACGUCCgCGAGGAGACGg -3'
miRNA:   3'- -UCaGCGa------CGUGCAGGgGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 116759 0.75 0.539254
Target:  5'- --cCGC-GCGCGUCUCCGAGGAGAgGc -3'
miRNA:   3'- ucaGCGaCGUGCAGGGGCUCUUCUgC- -5'
9224 3' -56.6 NC_002512.2 + 29240 0.75 0.539254
Target:  5'- gGGUCGC-GCAgucCGUCCuCCGAcGggGACGa -3'
miRNA:   3'- -UCAGCGaCGU---GCAGG-GGCU-CuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 155876 0.74 0.558502
Target:  5'- --aCGCUGUuCGUCCCCGAcggcgggcgcGggGACGa -3'
miRNA:   3'- ucaGCGACGuGCAGGGGCU----------CuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 147465 0.74 0.587714
Target:  5'- uGUCGCUGCugGUCUUCGcGcGGGCGc -3'
miRNA:   3'- uCAGCGACGugCAGGGGCuCuUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 154499 0.74 0.59752
Target:  5'- uGGUCGUggGCGCGUCCUCGGGcgauGACu -3'
miRNA:   3'- -UCAGCGa-CGUGCAGGGGCUCuu--CUGc -5'
9224 3' -56.6 NC_002512.2 + 171504 0.73 0.627051
Target:  5'- gAGUCGCUgGC-CGUCaCCCucGAGGACGu -3'
miRNA:   3'- -UCAGCGA-CGuGCAG-GGGcuCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 81819 0.73 0.636911
Target:  5'- --gCGCcGCGagGUCUCCGAGAGGACGa -3'
miRNA:   3'- ucaGCGaCGUg-CAGGGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 93982 0.72 0.686012
Target:  5'- uGUCGCUGCGCGUCCgCGAac--GCGu -3'
miRNA:   3'- uCAGCGACGUGCAGGgGCUcuucUGC- -5'
9224 3' -56.6 NC_002512.2 + 106960 0.72 0.695739
Target:  5'- aAGUUGCaGCGCucgcgcucGUCCCCGuAGAAGGCc -3'
miRNA:   3'- -UCAGCGaCGUG--------CAGGGGC-UCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 196166 0.72 0.695739
Target:  5'- cGGUCGaCgagGgGCGagCCCGAGggGGCGa -3'
miRNA:   3'- -UCAGC-Ga--CgUGCagGGGCUCuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 214804 0.72 0.704451
Target:  5'- uGGUCGCggagGUcCGUCUCCGAGAGucgcgguGACGa -3'
miRNA:   3'- -UCAGCGa---CGuGCAGGGGCUCUU-------CUGC- -5'
9224 3' -56.6 NC_002512.2 + 25607 0.72 0.705417
Target:  5'- aAGUCGC-GCACGUCC---AGGAGGCGg -3'
miRNA:   3'- -UCAGCGaCGUGCAGGggcUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 214207 0.72 0.715037
Target:  5'- --cCGCUGCGCccgcugCCCCGGGAcgucAGGCGg -3'
miRNA:   3'- ucaGCGACGUGca----GGGGCUCU----UCUGC- -5'
9224 3' -56.6 NC_002512.2 + 3757 0.71 0.724591
Target:  5'- gAGUgGaaGUGCGagCCCGAGGAGACGg -3'
miRNA:   3'- -UCAgCgaCGUGCagGGGCUCUUCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.