miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9224 3' -56.6 NC_002512.2 + 27219 0.7 0.814719
Target:  5'- cAGUCGCcGC-CGUgCCCUGAGGGaGCGg -3'
miRNA:   3'- -UCAGCGaCGuGCA-GGGGCUCUUcUGC- -5'
9224 3' -56.6 NC_002512.2 + 34471 1.09 0.004266
Target:  5'- cAGUCGCUGCACGUCCCCGAGAAGACGa -3'
miRNA:   3'- -UCAGCGACGUGCAGGGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 10325 0.78 0.39629
Target:  5'- cGUCGCa-CACGUCCCCGGcGAAGACc -3'
miRNA:   3'- uCAGCGacGUGCAGGGGCU-CUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 6091 0.71 0.724591
Target:  5'- cGGUCGCcGCcgACGUCCCCGGc--GACGu -3'
miRNA:   3'- -UCAGCGaCG--UGCAGGGGCUcuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 83462 0.7 0.780078
Target:  5'- aAGUCGUgcggggcgGCGCGcagCUUCGGGggGACGa -3'
miRNA:   3'- -UCAGCGa-------CGUGCa--GGGGCUCuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 134141 0.76 0.464928
Target:  5'- cGUCGCggcGCGCGUCCcggCCGGcGggGACGg -3'
miRNA:   3'- uCAGCGa--CGUGCAGG---GGCU-CuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 147465 0.74 0.587714
Target:  5'- uGUCGCUGCugGUCUUCGcGcGGGCGc -3'
miRNA:   3'- uCAGCGACGugCAGGGGCuCuUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 3757 0.71 0.724591
Target:  5'- gAGUgGaaGUGCGagCCCGAGGAGACGg -3'
miRNA:   3'- -UCAgCgaCGUGCagGGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 83383 0.7 0.797676
Target:  5'- cGUCGCggagacccGCGCGUCCCCGccguGggGGu- -3'
miRNA:   3'- uCAGCGa-------CGUGCAGGGGCu---CuuCUgc -5'
9224 3' -56.6 NC_002512.2 + 13577 0.69 0.831146
Target:  5'- gGGcCGCagaUGCaggugacccACGUCCCCGGGAAcucGACGa -3'
miRNA:   3'- -UCaGCG---ACG---------UGCAGGGGCUCUU---CUGC- -5'
9224 3' -56.6 NC_002512.2 + 124188 0.66 0.955972
Target:  5'- ---gGCUGCuCGUCCgCCGGGGacagAGGCa -3'
miRNA:   3'- ucagCGACGuGCAGG-GGCUCU----UCUGc -5'
9224 3' -56.6 NC_002512.2 + 29240 0.75 0.539254
Target:  5'- gGGUCGC-GCAgucCGUCCuCCGAcGggGACGa -3'
miRNA:   3'- -UCAGCGaCGU---GCAGG-GGCU-CuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 74280 0.76 0.473941
Target:  5'- cAGgCGCcGCACGUCCCCGugguccucgacGGAGGACa -3'
miRNA:   3'- -UCaGCGaCGUGCAGGGGC-----------UCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 41198 0.7 0.788943
Target:  5'- gAGcCGCcGUgauCGUCCCCGAGAccgccgcggucGGACGa -3'
miRNA:   3'- -UCaGCGaCGu--GCAGGGGCUCU-----------UCUGC- -5'
9224 3' -56.6 NC_002512.2 + 45072 0.7 0.797676
Target:  5'- uGUCGCggccgGCGCGgaagggucUCCCCGcGGAGGCc -3'
miRNA:   3'- uCAGCGa----CGUGC--------AGGGGCuCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 116759 0.75 0.539254
Target:  5'- --cCGC-GCGCGUCUCCGAGGAGAgGc -3'
miRNA:   3'- ucaGCGaCGUGCAGGGGCUCUUCUgC- -5'
9224 3' -56.6 NC_002512.2 + 165722 0.69 0.823013
Target:  5'- uAGUCGCUGUuCGUaUCCGGGAAucuGGCGa -3'
miRNA:   3'- -UCAGCGACGuGCAgGGGCUCUU---CUGC- -5'
9224 3' -56.6 NC_002512.2 + 87089 0.69 0.839111
Target:  5'- gGGUCGCgggGCgACGUgCUgGGGAGGugGc -3'
miRNA:   3'- -UCAGCGa--CG-UGCAgGGgCUCUUCugC- -5'
9224 3' -56.6 NC_002512.2 + 25607 0.72 0.705417
Target:  5'- aAGUCGC-GCACGUCC---AGGAGGCGg -3'
miRNA:   3'- -UCAGCGaCGUGCAGGggcUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 37369 0.7 0.788943
Target:  5'- cGUCGUcggacccCAUGUCCuCCGAGAAGACc -3'
miRNA:   3'- uCAGCGac-----GUGCAGG-GGCUCUUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.