miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9224 3' -56.6 NC_002512.2 + 3757 0.71 0.724591
Target:  5'- gAGUgGaaGUGCGagCCCGAGGAGACGg -3'
miRNA:   3'- -UCAgCgaCGUGCagGGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 4495 0.67 0.919557
Target:  5'- ---gGC-GC-CGUCCCCGAaGAGGAUGg -3'
miRNA:   3'- ucagCGaCGuGCAGGGGCU-CUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 4825 0.68 0.876197
Target:  5'- cGGgacgUGUUGCGCG-CCgCCGAGGAGcGCGg -3'
miRNA:   3'- -UCa---GCGACGUGCaGG-GGCUCUUC-UGC- -5'
9224 3' -56.6 NC_002512.2 + 6091 0.71 0.724591
Target:  5'- cGGUCGCcGCcgACGUCCCCGGc--GACGu -3'
miRNA:   3'- -UCAGCGaCG--UGCAGGGGCUcuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 7250 0.67 0.92488
Target:  5'- cGUCGCgGCggagcgGCGUCCgUCGGGAucGGGCGc -3'
miRNA:   3'- uCAGCGaCG------UGCAGG-GGCUCU--UCUGC- -5'
9224 3' -56.6 NC_002512.2 + 7615 0.69 0.854511
Target:  5'- cGGUCGCgGCGCGUUuggucaCCGuGGAGGCc -3'
miRNA:   3'- -UCAGCGaCGUGCAGg-----GGCuCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 10325 0.78 0.39629
Target:  5'- cGUCGCa-CACGUCCCCGGcGAAGACc -3'
miRNA:   3'- uCAGCGacGUGCAGGGGCU-CUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 10877 0.68 0.902264
Target:  5'- cGUCGCaGCAgcaGUgCUgGAGGAGGCGg -3'
miRNA:   3'- uCAGCGaCGUg--CAgGGgCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 11286 0.68 0.902264
Target:  5'- gAGUcCGCggGCGaGaCCCCGGGGAGACc -3'
miRNA:   3'- -UCA-GCGa-CGUgCaGGGGCUCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 12288 0.68 0.883027
Target:  5'- gAGUCGCcG-ACGacCCCCGAGgcGGCGc -3'
miRNA:   3'- -UCAGCGaCgUGCa-GGGGCUCuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 13408 0.66 0.934861
Target:  5'- --gCGCUGCGCcUCCCUGuG-GGACGc -3'
miRNA:   3'- ucaGCGACGUGcAGGGGCuCuUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 13577 0.69 0.831146
Target:  5'- gGGcCGCagaUGCaggugacccACGUCCCCGGGAAcucGACGa -3'
miRNA:   3'- -UCaGCG---ACG---------UGCAGGGGCUCUU---CUGC- -5'
9224 3' -56.6 NC_002512.2 + 15288 0.66 0.934861
Target:  5'- uAGUCggGCUGCAggaagagcgucuCGUCgCCCaggcggGAGggGACGa -3'
miRNA:   3'- -UCAG--CGACGU------------GCAG-GGG------CUCuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 19841 0.67 0.929981
Target:  5'- aGGUCG----ACGUCCCCGgagcGGAAGGCGc -3'
miRNA:   3'- -UCAGCgacgUGCAGGGGC----UCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 20611 0.66 0.955972
Target:  5'- cAG-CGCUcCACGUCCUCGaAGGAGGucCGg -3'
miRNA:   3'- -UCaGCGAcGUGCAGGGGC-UCUUCU--GC- -5'
9224 3' -56.6 NC_002512.2 + 21918 0.66 0.932935
Target:  5'- cGUCGCcGCuACGgagggcgacgacgUgCCGAGAGGACGa -3'
miRNA:   3'- uCAGCGaCG-UGCa------------GgGGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 24788 0.66 0.948177
Target:  5'- gGGUCcggGCGCG-CCCCccGAGGACGg -3'
miRNA:   3'- -UCAGcgaCGUGCaGGGGcuCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 25607 0.72 0.705417
Target:  5'- aAGUCGC-GCACGUCC---AGGAGGCGg -3'
miRNA:   3'- -UCAGCGaCGUGCAGGggcUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 27219 0.7 0.814719
Target:  5'- cAGUCGCcGC-CGUgCCCUGAGGGaGCGg -3'
miRNA:   3'- -UCAGCGaCGuGCA-GGGGCUCUUcUGC- -5'
9224 3' -56.6 NC_002512.2 + 29240 0.75 0.539254
Target:  5'- gGGUCGC-GCAgucCGUCCuCCGAcGggGACGa -3'
miRNA:   3'- -UCAGCGaCGU---GCAGG-GGCU-CuuCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.