Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9224 | 3' | -56.6 | NC_002512.2 | + | 3757 | 0.71 | 0.724591 |
Target: 5'- gAGUgGaaGUGCGagCCCGAGGAGACGg -3' miRNA: 3'- -UCAgCgaCGUGCagGGGCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 4495 | 0.67 | 0.919557 |
Target: 5'- ---gGC-GC-CGUCCCCGAaGAGGAUGg -3' miRNA: 3'- ucagCGaCGuGCAGGGGCU-CUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 4825 | 0.68 | 0.876197 |
Target: 5'- cGGgacgUGUUGCGCG-CCgCCGAGGAGcGCGg -3' miRNA: 3'- -UCa---GCGACGUGCaGG-GGCUCUUC-UGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 6091 | 0.71 | 0.724591 |
Target: 5'- cGGUCGCcGCcgACGUCCCCGGc--GACGu -3' miRNA: 3'- -UCAGCGaCG--UGCAGGGGCUcuuCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 7250 | 0.67 | 0.92488 |
Target: 5'- cGUCGCgGCggagcgGCGUCCgUCGGGAucGGGCGc -3' miRNA: 3'- uCAGCGaCG------UGCAGG-GGCUCU--UCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 7615 | 0.69 | 0.854511 |
Target: 5'- cGGUCGCgGCGCGUUuggucaCCGuGGAGGCc -3' miRNA: 3'- -UCAGCGaCGUGCAGg-----GGCuCUUCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 10325 | 0.78 | 0.39629 |
Target: 5'- cGUCGCa-CACGUCCCCGGcGAAGACc -3' miRNA: 3'- uCAGCGacGUGCAGGGGCU-CUUCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 10877 | 0.68 | 0.902264 |
Target: 5'- cGUCGCaGCAgcaGUgCUgGAGGAGGCGg -3' miRNA: 3'- uCAGCGaCGUg--CAgGGgCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 11286 | 0.68 | 0.902264 |
Target: 5'- gAGUcCGCggGCGaGaCCCCGGGGAGACc -3' miRNA: 3'- -UCA-GCGa-CGUgCaGGGGCUCUUCUGc -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 12288 | 0.68 | 0.883027 |
Target: 5'- gAGUCGCcG-ACGacCCCCGAGgcGGCGc -3' miRNA: 3'- -UCAGCGaCgUGCa-GGGGCUCuuCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 13408 | 0.66 | 0.934861 |
Target: 5'- --gCGCUGCGCcUCCCUGuG-GGACGc -3' miRNA: 3'- ucaGCGACGUGcAGGGGCuCuUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 13577 | 0.69 | 0.831146 |
Target: 5'- gGGcCGCagaUGCaggugacccACGUCCCCGGGAAcucGACGa -3' miRNA: 3'- -UCaGCG---ACG---------UGCAGGGGCUCUU---CUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 15288 | 0.66 | 0.934861 |
Target: 5'- uAGUCggGCUGCAggaagagcgucuCGUCgCCCaggcggGAGggGACGa -3' miRNA: 3'- -UCAG--CGACGU------------GCAG-GGG------CUCuuCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 19841 | 0.67 | 0.929981 |
Target: 5'- aGGUCG----ACGUCCCCGgagcGGAAGGCGc -3' miRNA: 3'- -UCAGCgacgUGCAGGGGC----UCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 20611 | 0.66 | 0.955972 |
Target: 5'- cAG-CGCUcCACGUCCUCGaAGGAGGucCGg -3' miRNA: 3'- -UCaGCGAcGUGCAGGGGC-UCUUCU--GC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 21918 | 0.66 | 0.932935 |
Target: 5'- cGUCGCcGCuACGgagggcgacgacgUgCCGAGAGGACGa -3' miRNA: 3'- uCAGCGaCG-UGCa------------GgGGCUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 24788 | 0.66 | 0.948177 |
Target: 5'- gGGUCcggGCGCG-CCCCccGAGGACGg -3' miRNA: 3'- -UCAGcgaCGUGCaGGGGcuCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 25607 | 0.72 | 0.705417 |
Target: 5'- aAGUCGC-GCACGUCC---AGGAGGCGg -3' miRNA: 3'- -UCAGCGaCGUGCAGGggcUCUUCUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 27219 | 0.7 | 0.814719 |
Target: 5'- cAGUCGCcGC-CGUgCCCUGAGGGaGCGg -3' miRNA: 3'- -UCAGCGaCGuGCA-GGGGCUCUUcUGC- -5' |
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9224 | 3' | -56.6 | NC_002512.2 | + | 29240 | 0.75 | 0.539254 |
Target: 5'- gGGUCGC-GCAgucCGUCCuCCGAcGggGACGa -3' miRNA: 3'- -UCAGCGaCGU---GCAGG-GGCU-CuuCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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