miRNA display CGI


Results 1 - 20 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 3' -66.7 NC_002512.2 + 41248 1.09 0.00063
Target:  5'- gCCGCCGCCGGCGCCCUUGCGGCCCGAg -3'
miRNA:   3'- -GGCGGCGGCCGCGGGAACGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 220200 0.85 0.03409
Target:  5'- aCCcCCGCCGGgGCCCgacgGCGGCCCGGg -3'
miRNA:   3'- -GGcGGCGGCCgCGGGaa--CGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 97877 0.84 0.040489
Target:  5'- gCCGCCGagguccccCCGGCGCCCgggGCGGCCCa- -3'
miRNA:   3'- -GGCGGC--------GGCCGCGGGaa-CGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 99739 0.82 0.05171
Target:  5'- cCCGCCGCCGG-GCCCc-GCGGCCgCGAc -3'
miRNA:   3'- -GGCGGCGGCCgCGGGaaCGCCGG-GCU- -5'
9234 3' -66.7 NC_002512.2 + 146081 0.82 0.057
Target:  5'- gCCGCCGCCGGCgcGCCCgacGCGGUCCu- -3'
miRNA:   3'- -GGCGGCGGCCG--CGGGaa-CGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 99951 0.81 0.067546
Target:  5'- gCUGCCGCCGGUGCCUgauCGGCCUGGc -3'
miRNA:   3'- -GGCGGCGGCCGCGGGaacGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 137887 0.8 0.072621
Target:  5'- uCCGCCGCCGGCGacgcgggagaCCCggacGCGGCCCu- -3'
miRNA:   3'- -GGCGGCGGCCGC----------GGGaa--CGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 157083 0.8 0.076206
Target:  5'- -gGUCGCCGGCGCCCacgGCGGgCCCGu -3'
miRNA:   3'- ggCGGCGGCCGCGGGaa-CGCC-GGGCu -5'
9234 3' -66.7 NC_002512.2 + 38934 0.79 0.085923
Target:  5'- gCCGCgGCgGGCGCCCgcgUGCG-CCCGGg -3'
miRNA:   3'- -GGCGgCGgCCGCGGGa--ACGCcGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 114009 0.79 0.085923
Target:  5'- gCCGCCGUCGGC-CCCgcaGCGGCaCCGGg -3'
miRNA:   3'- -GGCGGCGGCCGcGGGaa-CGCCG-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 99904 0.79 0.092309
Target:  5'- gCGCCGCCGGCGCUCccgGCGGUguUCGAu -3'
miRNA:   3'- gGCGGCGGCCGCGGGaa-CGCCG--GGCU- -5'
9234 3' -66.7 NC_002512.2 + 217497 0.78 0.099143
Target:  5'- gCCGCCGCCGcCGCCCgaagGCGaGCUCGGg -3'
miRNA:   3'- -GGCGGCGGCcGCGGGaa--CGC-CGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 75915 0.78 0.103962
Target:  5'- gCCGCCGCCGGCGCCgc--CGGacCCCGAa -3'
miRNA:   3'- -GGCGGCGGCCGCGGgaacGCC--GGGCU- -5'
9234 3' -66.7 NC_002512.2 + 190952 0.78 0.106453
Target:  5'- gCGCaCGCgGGCGCCCgccgcgGCGGCCCc- -3'
miRNA:   3'- gGCG-GCGgCCGCGGGaa----CGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 31726 0.78 0.106453
Target:  5'- uCCGCCgGCCGGCGCCgaccCGGCCCGc -3'
miRNA:   3'- -GGCGG-CGGCCGCGGgaacGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 138011 0.77 0.116988
Target:  5'- gCCGCCGCCcGCGCCggacgGCGGCCuCGGg -3'
miRNA:   3'- -GGCGGCGGcCGCGGgaa--CGCCGG-GCU- -5'
9234 3' -66.7 NC_002512.2 + 80473 0.77 0.125519
Target:  5'- cCCGCCG-CGGUcCCCUcGCGGCCCGu -3'
miRNA:   3'- -GGCGGCgGCCGcGGGAaCGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 201844 0.77 0.125519
Target:  5'- uCCGCgGCCGGCagcucGCCUggggccUGCGGUCCGAg -3'
miRNA:   3'- -GGCGgCGGCCG-----CGGGa-----ACGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 108168 0.76 0.134624
Target:  5'- gCGUCGCCGGCGCCUUcUGCGGCg--- -3'
miRNA:   3'- gGCGGCGGCCGCGGGA-ACGCCGggcu -5'
9234 3' -66.7 NC_002512.2 + 112900 0.76 0.139078
Target:  5'- gCgGCCGUCGGCccGCCCggacggggcgucgGCGGCCCGGu -3'
miRNA:   3'- -GgCGGCGGCCG--CGGGaa-----------CGCCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.