miRNA display CGI


Results 1 - 20 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 3' -66.7 NC_002512.2 + 41248 1.09 0.00063
Target:  5'- gCCGCCGCCGGCGCCCUUGCGGCCCGAg -3'
miRNA:   3'- -GGCGGCGGCCGCGGGAACGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 104272 0.74 0.18561
Target:  5'- gUCGCCGCCGGCGUCUUUcuCGcGUCCGGc -3'
miRNA:   3'- -GGCGGCGGCCGCGGGAAc-GC-CGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 6207 0.73 0.212276
Target:  5'- gCCGuuGUCGGCGCCCUUGgagGaGCCCc- -3'
miRNA:   3'- -GGCggCGGCCGCGGGAACg--C-CGGGcu -5'
9234 3' -66.7 NC_002512.2 + 29173 0.66 0.584224
Target:  5'- aCCGCCgGgCGGCaGCCCgacGCcaCCCGAg -3'
miRNA:   3'- -GGCGG-CgGCCG-CGGGaa-CGccGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 31726 0.78 0.106453
Target:  5'- uCCGCCgGCCGGCGCCgaccCGGCCCGc -3'
miRNA:   3'- -GGCGG-CGGCCGCGGgaacGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 138011 0.77 0.116988
Target:  5'- gCCGCCGCCcGCGCCggacgGCGGCCuCGGg -3'
miRNA:   3'- -GGCGGCGGcCGCGGgaa--CGCCGG-GCU- -5'
9234 3' -66.7 NC_002512.2 + 69054 0.76 0.141027
Target:  5'- gCGCCGCCGGcCGCCCgccUGCuGGUgCCGGg -3'
miRNA:   3'- gGCGGCGGCC-GCGGGa--ACG-CCG-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 70957 0.76 0.143999
Target:  5'- -gGCCGCCGGCGCCCccGCcgaagccguacucGGCCgCGAc -3'
miRNA:   3'- ggCGGCGGCCGCGGGaaCG-------------CCGG-GCU- -5'
9234 3' -66.7 NC_002512.2 + 16648 0.75 0.169513
Target:  5'- aCGCagauccgGCCGGCGCCgUUgGCGGCCaCGAc -3'
miRNA:   3'- gGCGg------CGGCCGCGGgAA-CGCCGG-GCU- -5'
9234 3' -66.7 NC_002512.2 + 88591 0.74 0.181463
Target:  5'- gUCGCCGCCGGUGCCgCcgUGCGcGCggCCGGc -3'
miRNA:   3'- -GGCGGCGGCCGCGG-Ga-ACGC-CG--GGCU- -5'
9234 3' -66.7 NC_002512.2 + 83791 0.75 0.176997
Target:  5'- gCCGCCGCCgaggaccgcgucgGGCGCgCCggcggcgGCGGCuCCGGg -3'
miRNA:   3'- -GGCGGCGG-------------CCGCG-GGaa-----CGCCG-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 1759 0.75 0.165689
Target:  5'- gCGcCCGUCGGCGCCCagcacgacgUUGCGGCCg-- -3'
miRNA:   3'- gGC-GGCGGCCGCGGG---------AACGCCGGgcu -5'
9234 3' -66.7 NC_002512.2 + 97877 0.84 0.040489
Target:  5'- gCCGCCGagguccccCCGGCGCCCgggGCGGCCCa- -3'
miRNA:   3'- -GGCGGC--------GGCCGCGGGaa-CGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 11663 0.75 0.177399
Target:  5'- aUCGgCGCCGcG-GCCCgccGCGGCCCGAg -3'
miRNA:   3'- -GGCgGCGGC-CgCGGGaa-CGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 99951 0.81 0.067546
Target:  5'- gCUGCCGCCGGUGCCUgauCGGCCUGGc -3'
miRNA:   3'- -GGCGGCGGCCGCGGGaacGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 3507 0.76 0.154677
Target:  5'- gCCGUCGUCGGCccuccacccgaGCCCgcGgGGCCCGAa -3'
miRNA:   3'- -GGCGGCGGCCG-----------CGGGaaCgCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 27221 0.74 0.181463
Target:  5'- gUCGCCGCC-GUGCCCUgagggaGCGGgCCGGg -3'
miRNA:   3'- -GGCGGCGGcCGCGGGAa-----CGCCgGGCU- -5'
9234 3' -66.7 NC_002512.2 + 41332 0.74 0.18561
Target:  5'- gUCGCCGCCGGagcuGCCCgaGuUGGCCUGGu -3'
miRNA:   3'- -GGCGGCGGCCg---CGGGaaC-GCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 38934 0.79 0.085923
Target:  5'- gCCGCgGCgGGCGCCCgcgUGCG-CCCGGg -3'
miRNA:   3'- -GGCGgCGgCCGCGGGa--ACGCcGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 80473 0.77 0.125519
Target:  5'- cCCGCCG-CGGUcCCCUcGCGGCCCGu -3'
miRNA:   3'- -GGCGGCgGCCGcGGGAaCGCCGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.