miRNA display CGI


Results 1 - 20 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 3' -66.7 NC_002512.2 + 215060 0.66 0.566009
Target:  5'- aCCGUCGUCGGCGgcgucuaCCgcgucgGCGGgaCCGAg -3'
miRNA:   3'- -GGCGGCGGCCGCg------GGaa----CGCCg-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 29173 0.66 0.584224
Target:  5'- aCCGCCgGgCGGCaGCCCgacGCcaCCCGAg -3'
miRNA:   3'- -GGCGG-CgGCCG-CGGGaa-CGccGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 90650 0.66 0.563289
Target:  5'- gCCGCgGCCgcggucucggagucGGCGgCCgcgGCGGCCaGGg -3'
miRNA:   3'- -GGCGgCGG--------------CCGCgGGaa-CGCCGGgCU- -5'
9234 3' -66.7 NC_002512.2 + 96657 0.66 0.565102
Target:  5'- gCCGCCGCCcuccCGUCCUcgcuggGCGGacgacguCCCGAa -3'
miRNA:   3'- -GGCGGCGGcc--GCGGGAa-----CGCC-------GGGCU- -5'
9234 3' -66.7 NC_002512.2 + 98357 0.66 0.566009
Target:  5'- -gGCCGuuGGCGUCCUUcacgGCGucuCCCGu -3'
miRNA:   3'- ggCGGCggCCGCGGGAA----CGCc--GGGCu -5'
9234 3' -66.7 NC_002512.2 + 213003 0.66 0.566009
Target:  5'- gCgGCCGUCGG-GCCC--GgGGCCCu- -3'
miRNA:   3'- -GgCGGCGGCCgCGGGaaCgCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 89199 0.66 0.566009
Target:  5'- gUGCCGCUGuaGCCgaUGacgcaGGCCCGc -3'
miRNA:   3'- gGCGGCGGCcgCGGgaACg----CCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 98120 0.66 0.566009
Target:  5'- cCCGCuUGCCGGgGCgCUggucgucGCGGCCg-- -3'
miRNA:   3'- -GGCG-GCGGCCgCGgGAa------CGCCGGgcu -5'
9234 3' -66.7 NC_002512.2 + 123574 0.66 0.566009
Target:  5'- gCCGCCGaaGGCGC---UGCGgGUCUGAg -3'
miRNA:   3'- -GGCGGCggCCGCGggaACGC-CGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 148089 0.66 0.566009
Target:  5'- uCCGuCCcCCGGCGgCggcgGCGGCgCCGAa -3'
miRNA:   3'- -GGC-GGcGGCCGCgGgaa-CGCCG-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 160749 0.66 0.566009
Target:  5'- aCGgCGCCGGC-CCCggGCacggaGGuCCCGGa -3'
miRNA:   3'- gGCgGCGGCCGcGGGaaCG-----CC-GGGCU- -5'
9234 3' -66.7 NC_002512.2 + 184545 0.66 0.584225
Target:  5'- -aGCCGgCGGCGCgggCCggcgGaCGGCCCu- -3'
miRNA:   3'- ggCGGCgGCCGCG---GGaa--C-GCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 172886 0.66 0.566009
Target:  5'- aCCGCCGacCCGGcCGCCCacgGCuGUCCc- -3'
miRNA:   3'- -GGCGGC--GGCC-GCGGGaa-CGcCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 189064 0.66 0.569642
Target:  5'- gCgGCCGgCGGCGCUCUcGaCGGCgagucuccgcgacguCCGAu -3'
miRNA:   3'- -GgCGGCgGCCGCGGGAaC-GCCG---------------GGCU- -5'
9234 3' -66.7 NC_002512.2 + 115080 0.66 0.57237
Target:  5'- aCGUCGCgCGGCGCCUggccacccgcgugcaGCGGgCCa- -3'
miRNA:   3'- gGCGGCG-GCCGCGGGaa-------------CGCCgGGcu -5'
9234 3' -66.7 NC_002512.2 + 111579 0.66 0.575101
Target:  5'- cUCGUCGUCcGCGCgCU--CGGCCCGGa -3'
miRNA:   3'- -GGCGGCGGcCGCGgGAacGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 217115 0.66 0.575101
Target:  5'- gCGCCGCCGa-GUCCUgcgGCGGCagcagCGGg -3'
miRNA:   3'- gGCGGCGGCcgCGGGAa--CGCCGg----GCU- -5'
9234 3' -66.7 NC_002512.2 + 221445 0.66 0.575101
Target:  5'- aCCGCgGCCGGggcgcgguCGUCCgacCGGCCgCGGu -3'
miRNA:   3'- -GGCGgCGGCC--------GCGGGaacGCCGG-GCU- -5'
9234 3' -66.7 NC_002512.2 + 128026 0.66 0.575101
Target:  5'- cCCGCC-CCGGCGUCgaagagCUgcaCGGcCCCGAc -3'
miRNA:   3'- -GGCGGcGGCCGCGG------GAac-GCC-GGGCU- -5'
9234 3' -66.7 NC_002512.2 + 223506 0.66 0.581484
Target:  5'- cCCGUCGCgacgaccaCGGCggagaacggcacgcGCCC--GCGGCCCGc -3'
miRNA:   3'- -GGCGGCG--------GCCG--------------CGGGaaCGCCGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.