miRNA display CGI


Results 1 - 20 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 3' -66.7 NC_002512.2 + 335 0.72 0.269695
Target:  5'- uCCuCCGCCGGCGCCCcgccCGGCUCc- -3'
miRNA:   3'- -GGcGGCGGCCGCGGGaac-GCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 1669 0.69 0.40468
Target:  5'- cCCGCCGUCu-CGCCCggccucgaccGCGGCCuCGAa -3'
miRNA:   3'- -GGCGGCGGccGCGGGaa--------CGCCGG-GCU- -5'
9234 3' -66.7 NC_002512.2 + 1759 0.75 0.165689
Target:  5'- gCGcCCGUCGGCGCCCagcacgacgUUGCGGCCg-- -3'
miRNA:   3'- gGC-GGCGGCCGCGGG---------AACGCCGGgcu -5'
9234 3' -66.7 NC_002512.2 + 1861 0.69 0.396994
Target:  5'- gCCGCCGuCCGGuCGCCCcucgucccGCGuCCCGu -3'
miRNA:   3'- -GGCGGC-GGCC-GCGGGaa------CGCcGGGCu -5'
9234 3' -66.7 NC_002512.2 + 1915 0.66 0.566009
Target:  5'- cUCGgCGCCGGgGCCCUccucucCGGCUCc- -3'
miRNA:   3'- -GGCgGCGGCCgCGGGAac----GCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 1960 0.7 0.338989
Target:  5'- cUCGuCCGCCGGCGUCggagGCGGCgCGu -3'
miRNA:   3'- -GGC-GGCGGCCGCGGgaa-CGCCGgGCu -5'
9234 3' -66.7 NC_002512.2 + 2195 0.68 0.436343
Target:  5'- cCCGCCGCCgucgucgucucGGuCGCCg--GCGGCgCCGc -3'
miRNA:   3'- -GGCGGCGG-----------CC-GCGGgaaCGCCG-GGCu -5'
9234 3' -66.7 NC_002512.2 + 2273 0.7 0.332186
Target:  5'- gCCGCCGCCGccCGCCCUc-CGGCCg-- -3'
miRNA:   3'- -GGCGGCGGCc-GCGGGAacGCCGGgcu -5'
9234 3' -66.7 NC_002512.2 + 2295 0.66 0.5751
Target:  5'- nCGCUGCggguggCGGgGCUCUgcugcgccgGCGGUCCGGa -3'
miRNA:   3'- gGCGGCG------GCCgCGGGAa--------CGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 2415 0.69 0.41246
Target:  5'- cUCGCgGCCGGcCGCCCc--CGGCCUc- -3'
miRNA:   3'- -GGCGgCGGCC-GCGGGaacGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 2461 0.69 0.381905
Target:  5'- aCCGCgGCCcGCGCCCgcGCgcgagaguaGGUCCGGg -3'
miRNA:   3'- -GGCGgCGGcCGCGGGaaCG---------CCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 2656 0.66 0.566009
Target:  5'- cCCGuCCGCC-GCGCCUcc-CGGUCCGc -3'
miRNA:   3'- -GGC-GGCGGcCGCGGGaacGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 2803 0.67 0.477846
Target:  5'- gCCgGCgGCCGGCGggaCCCggcgcggGCgcgGGCCCGGa -3'
miRNA:   3'- -GG-CGgCGGCCGC---GGGaa-----CG---CCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 3161 0.73 0.231835
Target:  5'- cCCGCCGUCGuCGCCC--GCGGCCUc- -3'
miRNA:   3'- -GGCGGCGGCcGCGGGaaCGCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 3197 0.7 0.367204
Target:  5'- gCCGCCGCgGGCGa-----CGGCCCGGc -3'
miRNA:   3'- -GGCGGCGgCCGCgggaacGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 3507 0.76 0.154677
Target:  5'- gCCGUCGUCGGCccuccacccgaGCCCgcGgGGCCCGAa -3'
miRNA:   3'- -GGCGGCGGCCG-----------CGGGaaCgCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 4085 0.71 0.287388
Target:  5'- -gGCCacCCGGcCGCCC--GCGGCCCGGc -3'
miRNA:   3'- ggCGGc-GGCC-GCGGGaaCGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 4915 0.72 0.256181
Target:  5'- gCCGCCGCCGcCGCCCagcggguagacgGCGGagCCGAg -3'
miRNA:   3'- -GGCGGCGGCcGCGGGaa----------CGCCg-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 5089 0.68 0.461003
Target:  5'- gUCGUCGCCGGCGUCggcGCGGgCgGGa -3'
miRNA:   3'- -GGCGGCGGCCGCGGgaaCGCCgGgCU- -5'
9234 3' -66.7 NC_002512.2 + 5809 0.7 0.338989
Target:  5'- aCCGCCGCC-GC-CCCguucgGCGGCgUCGAa -3'
miRNA:   3'- -GGCGGCGGcCGcGGGaa---CGCCG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.