Results 21 - 40 of 453 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9234 | 3' | -66.7 | NC_002512.2 | + | 29173 | 0.66 | 0.584224 |
Target: 5'- aCCGCCgGgCGGCaGCCCgacGCcaCCCGAg -3' miRNA: 3'- -GGCGG-CgGCCG-CGGGaa-CGccGGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 215060 | 0.66 | 0.566009 |
Target: 5'- aCCGUCGUCGGCGgcgucuaCCgcgucgGCGGgaCCGAg -3' miRNA: 3'- -GGCGGCGGCCGCg------GGaa----CGCCg-GGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 98831 | 0.66 | 0.584225 |
Target: 5'- uCgGCCuCCGGCGCggcgccguccucCCccGCGGcCCCGAc -3' miRNA: 3'- -GgCGGcGGCCGCG------------GGaaCGCC-GGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 223506 | 0.66 | 0.581484 |
Target: 5'- cCCGUCGCgacgaccaCGGCggagaacggcacgcGCCC--GCGGCCCGc -3' miRNA: 3'- -GGCGGCG--------GCCG--------------CGGGaaCGCCGGGCu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 128026 | 0.66 | 0.575101 |
Target: 5'- cCCGCC-CCGGCGUCgaagagCUgcaCGGcCCCGAc -3' miRNA: 3'- -GGCGGcGGCCGCGG------GAac-GCC-GGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 221445 | 0.66 | 0.575101 |
Target: 5'- aCCGCgGCCGGggcgcgguCGUCCgacCGGCCgCGGu -3' miRNA: 3'- -GGCGgCGGCC--------GCGGGaacGCCGG-GCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 217115 | 0.66 | 0.575101 |
Target: 5'- gCGCCGCCGa-GUCCUgcgGCGGCagcagCGGg -3' miRNA: 3'- gGCGGCGGCcgCGGGAa--CGCCGg----GCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 111579 | 0.66 | 0.575101 |
Target: 5'- cUCGUCGUCcGCGCgCU--CGGCCCGGa -3' miRNA: 3'- -GGCGGCGGcCGCGgGAacGCCGGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 115080 | 0.66 | 0.57237 |
Target: 5'- aCGUCGCgCGGCGCCUggccacccgcgugcaGCGGgCCa- -3' miRNA: 3'- gGCGGCG-GCCGCGGGaa-------------CGCCgGGcu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 189064 | 0.66 | 0.569642 |
Target: 5'- gCgGCCGgCGGCGCUCUcGaCGGCgagucuccgcgacguCCGAu -3' miRNA: 3'- -GgCGGCgGCCGCGGGAaC-GCCG---------------GGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 172886 | 0.66 | 0.566009 |
Target: 5'- aCCGCCGacCCGGcCGCCCacgGCuGUCCc- -3' miRNA: 3'- -GGCGGC--GGCC-GCGGGaa-CGcCGGGcu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 184545 | 0.66 | 0.584225 |
Target: 5'- -aGCCGgCGGCGCgggCCggcgGaCGGCCCu- -3' miRNA: 3'- ggCGGCgGCCGCG---GGaa--C-GCCGGGcu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 160749 | 0.66 | 0.566009 |
Target: 5'- aCGgCGCCGGC-CCCggGCacggaGGuCCCGGa -3' miRNA: 3'- gGCgGCGGCCGcGGGaaCG-----CC-GGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 148089 | 0.66 | 0.566009 |
Target: 5'- uCCGuCCcCCGGCGgCggcgGCGGCgCCGAa -3' miRNA: 3'- -GGC-GGcGGCCGCgGgaa-CGCCG-GGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 123574 | 0.66 | 0.566009 |
Target: 5'- gCCGCCGaaGGCGC---UGCGgGUCUGAg -3' miRNA: 3'- -GGCGGCggCCGCGggaACGC-CGGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 98120 | 0.66 | 0.566009 |
Target: 5'- cCCGCuUGCCGGgGCgCUggucgucGCGGCCg-- -3' miRNA: 3'- -GGCG-GCGGCCgCGgGAa------CGCCGGgcu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 89199 | 0.66 | 0.566009 |
Target: 5'- gUGCCGCUGuaGCCgaUGacgcaGGCCCGc -3' miRNA: 3'- gGCGGCGGCcgCGGgaACg----CCGGGCu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 213003 | 0.66 | 0.566009 |
Target: 5'- gCgGCCGUCGG-GCCC--GgGGCCCu- -3' miRNA: 3'- -GgCGGCGGCCgCGGGaaCgCCGGGcu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 98357 | 0.66 | 0.566009 |
Target: 5'- -gGCCGuuGGCGUCCUUcacgGCGucuCCCGu -3' miRNA: 3'- ggCGGCggCCGCGGGAA----CGCc--GGGCu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 96657 | 0.66 | 0.565102 |
Target: 5'- gCCGCCGCCcuccCGUCCUcgcuggGCGGacgacguCCCGAa -3' miRNA: 3'- -GGCGGCGGcc--GCGGGAa-----CGCC-------GGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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