miRNA display CGI


Results 21 - 40 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 3' -66.7 NC_002512.2 + 41248 1.09 0.00063
Target:  5'- gCCGCCGCCGGCGCCCUUGCGGCCCGAg -3'
miRNA:   3'- -GGCGGCGGCCGCGGGAACGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 116973 0.72 0.247483
Target:  5'- -gGCCGCCGaCGCCCcguccggGCGGgCCGAc -3'
miRNA:   3'- ggCGGCGGCcGCGGGaa-----CGCCgGGCU- -5'
9234 3' -66.7 NC_002512.2 + 12773 0.72 0.247483
Target:  5'- gCCGCCGCaggacucggCGGCGCCCccGCuGCCCc- -3'
miRNA:   3'- -GGCGGCG---------GCCGCGGGaaCGcCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 26735 0.73 0.212276
Target:  5'- gCGUCGCCGGCGCCgCUguacgccacggUGaUGGCCCa- -3'
miRNA:   3'- gGCGGCGGCCGCGG-GA-----------AC-GCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 92646 0.75 0.173416
Target:  5'- cUCGCCGCCGGUGUCCUcGuCGGgaCCGGg -3'
miRNA:   3'- -GGCGGCGGCCGCGGGAaC-GCCg-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 229738 0.72 0.269695
Target:  5'- uCCuCCGCCGGCGCCCcgccCGGCUCc- -3'
miRNA:   3'- -GGcGGCGGCCGCGGGaac-GCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 10470 0.72 0.25289
Target:  5'- gCCGCCGCCccgggcgugGGCGUCgcgGCGGgCCGAc -3'
miRNA:   3'- -GGCGGCGG---------CCGCGGgaaCGCCgGGCU- -5'
9234 3' -66.7 NC_002512.2 + 70957 0.76 0.143999
Target:  5'- -gGCCGCCGGCGCCCccGCcgaagccguacucGGCCgCGAc -3'
miRNA:   3'- ggCGGCGGCCGCGGGaaCG-------------CCGG-GCU- -5'
9234 3' -66.7 NC_002512.2 + 133579 0.73 0.231835
Target:  5'- aUCGaCCGCCGGgGaCCCgaGCGGgCCGGc -3'
miRNA:   3'- -GGC-GGCGGCCgC-GGGaaCGCCgGGCU- -5'
9234 3' -66.7 NC_002512.2 + 103122 0.73 0.217029
Target:  5'- gCCGCCGCCGccGCGCCCcgagGCGuCUCGGg -3'
miRNA:   3'- -GGCGGCGGC--CGCGGGaa--CGCcGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 80473 0.77 0.125519
Target:  5'- cCCGCCG-CGGUcCCCUcGCGGCCCGu -3'
miRNA:   3'- -GGCGGCgGCCGcGGGAaCGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 138011 0.77 0.116988
Target:  5'- gCCGCCGCCcGCGCCggacgGCGGCCuCGGg -3'
miRNA:   3'- -GGCGGCGGcCGCGGgaa--CGCCGG-GCU- -5'
9234 3' -66.7 NC_002512.2 + 7424 0.72 0.275493
Target:  5'- aCCGCgaggGCCGGCGCgagguuggCC--GCGGCCCGGg -3'
miRNA:   3'- -GGCGg---CGGCCGCG--------GGaaCGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 129993 0.72 0.275493
Target:  5'- gCGCCGgCGGCGCC---GCGuGCCCGu -3'
miRNA:   3'- gGCGGCgGCCGCGGgaaCGC-CGGGCu -5'
9234 3' -66.7 NC_002512.2 + 60823 0.72 0.247483
Target:  5'- gCCGCCGCCGcggaGC-CCCUcGCG-CCCGAg -3'
miRNA:   3'- -GGCGGCGGC----CGcGGGAaCGCcGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 27221 0.74 0.181463
Target:  5'- gUCGCCGCC-GUGCCCUgagggaGCGGgCCGGg -3'
miRNA:   3'- -GGCGGCGGcCGCGGGAa-----CGCCgGGCU- -5'
9234 3' -66.7 NC_002512.2 + 83791 0.75 0.176997
Target:  5'- gCCGCCGCCgaggaccgcgucgGGCGCgCCggcggcgGCGGCuCCGGg -3'
miRNA:   3'- -GGCGGCGG-------------CCGCG-GGaa-----CGCCG-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 31726 0.78 0.106453
Target:  5'- uCCGCCgGCCGGCGCCgaccCGGCCCGc -3'
miRNA:   3'- -GGCGG-CGGCCGCGGgaacGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 72498 0.73 0.212276
Target:  5'- gUGCaGCCGGCGaucucguccgguCCCUgcccgGCGGCCCGGa -3'
miRNA:   3'- gGCGgCGGCCGC------------GGGAa----CGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 3161 0.73 0.231835
Target:  5'- cCCGCCGUCGuCGCCC--GCGGCCUc- -3'
miRNA:   3'- -GGCGGCGGCcGCGGGaaCGCCGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.