Results 21 - 40 of 453 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9234 | 3' | -66.7 | NC_002512.2 | + | 103122 | 0.73 | 0.217029 |
Target: 5'- gCCGCCGCCGccGCGCCCcgagGCGuCUCGGg -3' miRNA: 3'- -GGCGGCGGC--CGCGGGaa--CGCcGGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 6207 | 0.73 | 0.212276 |
Target: 5'- gCCGuuGUCGGCGCCCUUGgagGaGCCCc- -3' miRNA: 3'- -GGCggCGGCCGCGGGAACg--C-CGGGcu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 1759 | 0.75 | 0.165689 |
Target: 5'- gCGcCCGUCGGCGCCCagcacgacgUUGCGGCCg-- -3' miRNA: 3'- gGC-GGCGGCCGCGGG---------AACGCCGGgcu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 38934 | 0.79 | 0.085923 |
Target: 5'- gCCGCgGCgGGCGCCCgcgUGCG-CCCGGg -3' miRNA: 3'- -GGCGgCGgCCGCGGGa--ACGCcGGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 34882 | 0.72 | 0.263995 |
Target: 5'- gCCGCCGCCGGgaccgccguCGCCCUcuUGCG--CCGAg -3' miRNA: 3'- -GGCGGCGGCC---------GCGGGA--ACGCcgGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 109008 | 0.73 | 0.242172 |
Target: 5'- gCGCCGgCGGCGUCgUccUGCGGaCCCGc -3' miRNA: 3'- gGCGGCgGCCGCGGgA--ACGCC-GGGCu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 104272 | 0.74 | 0.18561 |
Target: 5'- gUCGCCGCCGGCGUCUUUcuCGcGUCCGGc -3' miRNA: 3'- -GGCGGCGGCCGCGGGAAc-GC-CGGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 99951 | 0.81 | 0.067546 |
Target: 5'- gCUGCCGCCGGUGCCUgauCGGCCUGGc -3' miRNA: 3'- -GGCGGCGGCCGCGGGaacGCCGGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 112786 | 0.73 | 0.236957 |
Target: 5'- gCCGCUguGCCGG-GUCCaggGCGGCCCGc -3' miRNA: 3'- -GGCGG--CGGCCgCGGGaa-CGCCGGGCu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 97877 | 0.84 | 0.040489 |
Target: 5'- gCCGCCGagguccccCCGGCGCCCgggGCGGCCCa- -3' miRNA: 3'- -GGCGGC--------GGCCGCGGGaa-CGCCGGGcu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 41332 | 0.74 | 0.18561 |
Target: 5'- gUCGCCGCCGGagcuGCCCgaGuUGGCCUGGu -3' miRNA: 3'- -GGCGGCGGCCg---CGGGaaC-GCCGGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 16248 | 0.73 | 0.221872 |
Target: 5'- gUCGUCGCCGuCGCCCgcgGCGGCCa-- -3' miRNA: 3'- -GGCGGCGGCcGCGGGaa-CGCCGGgcu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 11663 | 0.75 | 0.177399 |
Target: 5'- aUCGgCGCCGcG-GCCCgccGCGGCCCGAg -3' miRNA: 3'- -GGCgGCGGC-CgCGGGaa-CGCCGGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 16648 | 0.75 | 0.169513 |
Target: 5'- aCGCagauccgGCCGGCGCCgUUgGCGGCCaCGAc -3' miRNA: 3'- gGCGg------CGGCCGCGGgAA-CGCCGG-GCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 69054 | 0.76 | 0.141027 |
Target: 5'- gCGCCGCCGGcCGCCCgccUGCuGGUgCCGGg -3' miRNA: 3'- gGCGGCGGCC-GCGGGa--ACG-CCG-GGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 31726 | 0.78 | 0.106453 |
Target: 5'- uCCGCCgGCCGGCGCCgaccCGGCCCGc -3' miRNA: 3'- -GGCGG-CGGCCGCGGgaacGCCGGGCu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 72806 | 0.72 | 0.275493 |
Target: 5'- cCCGCCGUgGGCGCCg--GCGacCCCGGa -3' miRNA: 3'- -GGCGGCGgCCGCGGgaaCGCc-GGGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 335 | 0.72 | 0.269695 |
Target: 5'- uCCuCCGCCGGCGCCCcgccCGGCUCc- -3' miRNA: 3'- -GGcGGCGGCCGCGGGaac-GCCGGGcu -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 82693 | 0.72 | 0.25289 |
Target: 5'- -gGCUGUCGGCGUCCgugcGCGGCgCGGg -3' miRNA: 3'- ggCGGCGGCCGCGGGaa--CGCCGgGCU- -5' |
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9234 | 3' | -66.7 | NC_002512.2 | + | 60823 | 0.72 | 0.247483 |
Target: 5'- gCCGCCGCCGcggaGC-CCCUcGCG-CCCGAg -3' miRNA: 3'- -GGCGGCGGC----CGcGGGAaCGCcGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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