miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 156473 0.66 0.975724
Target:  5'- -cUCggggGCgGCGGG-CUCGGCGGgCUg -3'
miRNA:   3'- gaAGaa--CGgCGUCCuGAGCUGCUgGA- -5'
9234 5' -55.1 NC_002512.2 + 148756 0.67 0.949742
Target:  5'- cCUUCUUcgUGCGcGACuUCGACGACCUg -3'
miRNA:   3'- -GAAGAAcgGCGUcCUG-AGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 196386 0.67 0.957487
Target:  5'- aCUUCgggacGCCGCgggucuggcgcgGGGACgcggggggCGGCGGCCg -3'
miRNA:   3'- -GAAGaa---CGGCG------------UCCUGa-------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 144621 0.66 0.961035
Target:  5'- -----cGCCGCGcuGGACgUGGCGGCCa -3'
miRNA:   3'- gaagaaCGGCGU--CCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 219425 0.66 0.961035
Target:  5'- -----cGCC-CGGGGCggCGGCGGCCUc -3'
miRNA:   3'- gaagaaCGGcGUCCUGa-GCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 92535 0.66 0.964373
Target:  5'- -aUCUacccgGCCGCGGcGGCcgCGGCGACg- -3'
miRNA:   3'- gaAGAa----CGGCGUC-CUGa-GCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 213632 0.66 0.964373
Target:  5'- -cUCUUgGCCGCcgcGGGCgacggCGACGACg- -3'
miRNA:   3'- gaAGAA-CGGCGu--CCUGa----GCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 70643 0.66 0.967505
Target:  5'- ----gUGCCGuCAGGACcauUC-ACGACCUa -3'
miRNA:   3'- gaagaACGGC-GUCCUG---AGcUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 202459 0.66 0.967505
Target:  5'- cCUUUUUuCCGCGGacGCUCGGCGACg- -3'
miRNA:   3'- -GAAGAAcGGCGUCc-UGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 106469 0.66 0.970437
Target:  5'- --aCggGCgGCGGGAcCUCGACcGCCUc -3'
miRNA:   3'- gaaGaaCGgCGUCCU-GAGCUGcUGGA- -5'
9234 5' -55.1 NC_002512.2 + 214310 0.66 0.970437
Target:  5'- uCUUCggcgUGCCGCAcgagcaGGC-CGACGACUc -3'
miRNA:   3'- -GAAGa---ACGGCGUc-----CUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 21776 0.66 0.970437
Target:  5'- -----gGCCGCGucucuGGuuUCGACGACCa -3'
miRNA:   3'- gaagaaCGGCGU-----CCugAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 98616 0.66 0.970437
Target:  5'- -cUCUU-CCGCAGGAUggccgUGACGAgCg -3'
miRNA:   3'- gaAGAAcGGCGUCCUGa----GCUGCUgGa -5'
9234 5' -55.1 NC_002512.2 + 223792 0.66 0.970437
Target:  5'- -----cGUCGCcgGGGACgucggCGGCGACCg -3'
miRNA:   3'- gaagaaCGGCG--UCCUGa----GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 145931 0.66 0.973175
Target:  5'- -----cGCCGcCGGGACUUcuuCGACCUg -3'
miRNA:   3'- gaagaaCGGC-GUCCUGAGcu-GCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 219126 0.66 0.973175
Target:  5'- -----cGCgGCGGGGC-CGACGACg- -3'
miRNA:   3'- gaagaaCGgCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 34623 0.66 0.973175
Target:  5'- aCUUCgagUGucCCGCcuGugUCGACGAUCa -3'
miRNA:   3'- -GAAGa--AC--GGCGucCugAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 194899 0.66 0.973175
Target:  5'- cCUUCUccuCCGCGGGACgCGA-GGCCc -3'
miRNA:   3'- -GAAGAac-GGCGUCCUGaGCUgCUGGa -5'
9234 5' -55.1 NC_002512.2 + 121983 0.66 0.974727
Target:  5'- -----cGCCgGCGGGACgagaggaagaucgCGGCGGCCa -3'
miRNA:   3'- gaagaaCGG-CGUCCUGa------------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 219560 0.66 0.975724
Target:  5'- -gUCUUcGCCG-GGGACgugugCGACGGCUc -3'
miRNA:   3'- gaAGAA-CGGCgUCCUGa----GCUGCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.