miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9243 3' -60.4 NC_002512.2 + 74759 0.71 0.576471
Target:  5'- -uUCCCCGGAcGACCCaGGAgCUcuuccaggGUGGg -3'
miRNA:   3'- gcAGGGGCCU-CUGGGaCCUgGA--------CACC- -5'
9243 3' -60.4 NC_002512.2 + 100472 0.69 0.699702
Target:  5'- gCGUUCUCGGucguGGCCC-GGACCU-UGGg -3'
miRNA:   3'- -GCAGGGGCCu---CUGGGaCCUGGAcACC- -5'
9243 3' -60.4 NC_002512.2 + 152196 0.69 0.690324
Target:  5'- gGUCCUCGGAgagugGACCCcGGuCCUGgccGGu -3'
miRNA:   3'- gCAGGGGCCU-----CUGGGaCCuGGACa--CC- -5'
9243 3' -60.4 NC_002512.2 + 135655 0.7 0.661967
Target:  5'- uCGUaCCCCGuGGuGAUCCUGGucguCCUcGUGGg -3'
miRNA:   3'- -GCA-GGGGC-CU-CUGGGACCu---GGA-CACC- -5'
9243 3' -60.4 NC_002512.2 + 149138 0.7 0.642947
Target:  5'- --cCCCCGG-GACCCgGGACCgccgcgGGg -3'
miRNA:   3'- gcaGGGGCCuCUGGGaCCUGGaca---CC- -5'
9243 3' -60.4 NC_002512.2 + 146801 0.7 0.623897
Target:  5'- --aCCCggaGGAGGCCCgGGACCUGg-- -3'
miRNA:   3'- gcaGGGg--CCUCUGGGaCCUGGACacc -5'
9243 3' -60.4 NC_002512.2 + 142631 0.7 0.623897
Target:  5'- uCGcUCCCCGGAGACCCcucgcaGGuCagguugaUGUGGa -3'
miRNA:   3'- -GC-AGGGGCCUCUGGGa-----CCuGg------ACACC- -5'
9243 3' -60.4 NC_002512.2 + 53380 0.7 0.623897
Target:  5'- aCG-CUCCGGAGACCgaGGACgaG-GGa -3'
miRNA:   3'- -GCaGGGGCCUCUGGgaCCUGgaCaCC- -5'
9243 3' -60.4 NC_002512.2 + 185415 0.71 0.599171
Target:  5'- cCGgCCCCGGGGcGCCCUGGAggucuucgaggccguCCUGUc- -3'
miRNA:   3'- -GCaGGGGCCUC-UGGGACCU---------------GGACAcc -5'
9243 3' -60.4 NC_002512.2 + 100807 0.68 0.727511
Target:  5'- cCGUCCUCGGGGucgaCCUGGACgaGg-- -3'
miRNA:   3'- -GCAGGGGCCUCug--GGACCUGgaCacc -5'
9243 3' -60.4 NC_002512.2 + 159940 0.68 0.745707
Target:  5'- aCGUCCCCGGuGGCC--GGACCg---- -3'
miRNA:   3'- -GCAGGGGCCuCUGGgaCCUGGacacc -5'
9243 3' -60.4 NC_002512.2 + 208678 0.68 0.754679
Target:  5'- gCGU-CCCGGGGGCCgCUGucCCUGgacgGGu -3'
miRNA:   3'- -GCAgGGGCCUCUGG-GACcuGGACa---CC- -5'
9243 3' -60.4 NC_002512.2 + 116236 0.66 0.84561
Target:  5'- --cCCCCGGAGAaccacgaggccaCCCUgcaGGugCUGcGGa -3'
miRNA:   3'- gcaGGGGCCUCU------------GGGA---CCugGACaCC- -5'
9243 3' -60.4 NC_002512.2 + 118112 0.66 0.838058
Target:  5'- gCGUCCCagCGGGGcuCCCUGGGCgacGUGa -3'
miRNA:   3'- -GCAGGG--GCCUCu-GGGACCUGga-CACc -5'
9243 3' -60.4 NC_002512.2 + 164021 0.66 0.833448
Target:  5'- aGcCCCUGGAGAacaccgacuuucagaUCCUGGAgCUGUa- -3'
miRNA:   3'- gCaGGGGCCUCU---------------GGGACCUgGACAcc -5'
9243 3' -60.4 NC_002512.2 + 205096 0.66 0.830343
Target:  5'- cCGUCCUCGGGGggcgcGCCC-GGACCcGagcgGGu -3'
miRNA:   3'- -GCAGGGGCCUC-----UGGGaCCUGGaCa---CC- -5'
9243 3' -60.4 NC_002512.2 + 106978 0.66 0.830343
Target:  5'- uCGUCCCCGuagaaggccGGGACgCCcGGGCCg--GGg -3'
miRNA:   3'- -GCAGGGGC---------CUCUG-GGaCCUGGacaCC- -5'
9243 3' -60.4 NC_002512.2 + 192985 0.67 0.797987
Target:  5'- gGUCCuCCGGcGcGCUCUGGACCgcgGGc -3'
miRNA:   3'- gCAGG-GGCCuC-UGGGACCUGGacaCC- -5'
9243 3' -60.4 NC_002512.2 + 113506 0.67 0.781004
Target:  5'- cCG-CCCCGGGGACCgCaGGGCCa---- -3'
miRNA:   3'- -GCaGGGGCCUCUGG-GaCCUGGacacc -5'
9243 3' -60.4 NC_002512.2 + 101323 0.67 0.781004
Target:  5'- gGcCCCCGGAGGCCgucgaaggUGGACaUGUGa -3'
miRNA:   3'- gCaGGGGCCUCUGGg-------ACCUGgACACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.