miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9243 5' -58.8 NC_002512.2 + 212426 0.68 0.770208
Target:  5'- --gCGGGAGGUCGAGuucGGGccGGCCGg -3'
miRNA:   3'- uagGUCCUCCGGCUU---CUCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 227462 0.67 0.82242
Target:  5'- -gCCGGGggagAGGCCGggGGc--GGCCGg -3'
miRNA:   3'- uaGGUCC----UCCGGCuuCUcuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 121345 0.67 0.82242
Target:  5'- cUCCGGcggcGGGGCCGuuggacggcGGAGAgGGCCGg -3'
miRNA:   3'- uAGGUC----CUCCGGCu--------UCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 125205 0.67 0.814079
Target:  5'- cGUCCAGGAcGCgGAGGAGGaacGCCGc -3'
miRNA:   3'- -UAGGUCCUcCGgCUUCUCUac-CGGCa -5'
9243 5' -58.8 NC_002512.2 + 96504 0.67 0.805584
Target:  5'- gGUCCGGGcgaccGCCGGAGGGAgccGcGCCGg -3'
miRNA:   3'- -UAGGUCCuc---CGGCUUCUCUa--C-CGGCa -5'
9243 5' -58.8 NC_002512.2 + 95845 0.67 0.805584
Target:  5'- --gCAGGAGGCCGggGGcGGcguccucccagGGCCGc -3'
miRNA:   3'- uagGUCCUCCGGCuuCU-CUa----------CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 220311 0.67 0.796941
Target:  5'- -gCCGGGGGGCCGGg-----GGCCGg -3'
miRNA:   3'- uaGGUCCUCCGGCUucucuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 150039 0.67 0.788159
Target:  5'- -aCgAGGGGGCCGggGAcGAcggGGCgGg -3'
miRNA:   3'- uaGgUCCUCCGGCuuCU-CUa--CCGgCa -5'
9243 5' -58.8 NC_002512.2 + 94826 0.68 0.779245
Target:  5'- cGUCCcGGAGccGCCGGaggaAGAGcGUGGCCGc -3'
miRNA:   3'- -UAGGuCCUC--CGGCU----UCUC-UACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 148501 0.67 0.830599
Target:  5'- -gCCGGGgacgGGGaCGAGGAGgcGGCCGc -3'
miRNA:   3'- uaGGUCC----UCCgGCUUCUCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 138583 0.67 0.830599
Target:  5'- -aCCAcgcugcGGAucgcGGCCGggGAGAcgcUGGCCa- -3'
miRNA:   3'- uaGGU------CCU----CCGGCuuCUCU---ACCGGca -5'
9243 5' -58.8 NC_002512.2 + 94462 0.66 0.837816
Target:  5'- -gCCAGGAagcgaccGGCgGAGGAGAUccaGCCGg -3'
miRNA:   3'- uaGGUCCU-------CCGgCUUCUCUAc--CGGCa -5'
9243 5' -58.8 NC_002512.2 + 200423 0.66 0.868831
Target:  5'- ---gAGGAGGaCGAGGAGAaggGGUCGUc -3'
miRNA:   3'- uaggUCCUCCgGCUUCUCUa--CCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 216225 0.66 0.86156
Target:  5'- cGUCCGGGAGcuggaGCCGcggcGAGAcGGUCGUc -3'
miRNA:   3'- -UAGGUCCUC-----CGGCuu--CUCUaCCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 157368 0.66 0.86156
Target:  5'- gGUCCGGGccgccgggcaGGGaCCGGAcGAGAUcGCCGg -3'
miRNA:   3'- -UAGGUCC----------UCC-GGCUU-CUCUAcCGGCa -5'
9243 5' -58.8 NC_002512.2 + 185506 0.66 0.86156
Target:  5'- -gCCGGGcugcgcggGGGCCugccgcucuucGAGGGGGUGGCCu- -3'
miRNA:   3'- uaGGUCC--------UCCGG-----------CUUCUCUACCGGca -5'
9243 5' -58.8 NC_002512.2 + 226876 0.66 0.846444
Target:  5'- -cCCGGGAGGCCagGAAGgcccgGGAccgGGCCa- -3'
miRNA:   3'- uaGGUCCUCCGG--CUUC-----UCUa--CCGGca -5'
9243 5' -58.8 NC_002512.2 + 218779 0.66 0.846444
Target:  5'- cGUCCGGGgacgAGGCCGAGGcGGAcgacaccGCCGUc -3'
miRNA:   3'- -UAGGUCC----UCCGGCUUC-UCUac-----CGGCA- -5'
9243 5' -58.8 NC_002512.2 + 196632 0.66 0.846444
Target:  5'- -cCCGGGuGGCCGAcGccgugugucuGGggGGCCGg -3'
miRNA:   3'- uaGGUCCuCCGGCUuC----------UCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 211842 0.66 0.838609
Target:  5'- -cCCGGGcucucGGCCGAGGAGAaGGaCCu- -3'
miRNA:   3'- uaGGUCCu----CCGGCUUCUCUaCC-GGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.