miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9244 5' -56.1 NC_002512.2 + 222930 0.66 0.939573
Target:  5'- gGCCCgCGGGCCA-ACGA-CCUGGcCGg -3'
miRNA:   3'- -CGGG-GCUUGGUcUGCUaGGACCuGUu -5'
9244 5' -56.1 NC_002512.2 + 122895 0.66 0.937714
Target:  5'- aCCCCGGcCCGGGCG-UCCcggccuucuacggGGACGAg -3'
miRNA:   3'- cGGGGCUuGGUCUGCuAGGa------------CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 19339 0.66 0.939573
Target:  5'- aCCUCGuacACCAGACGAUgCcGGACc- -3'
miRNA:   3'- cGGGGCu--UGGUCUGCUAgGaCCUGuu -5'
9244 5' -56.1 NC_002512.2 + 86802 0.66 0.939573
Target:  5'- cGCCUgGAGCCGGuguACGG--CUGGGCAAc -3'
miRNA:   3'- -CGGGgCUUGGUC---UGCUagGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 7288 0.66 0.956204
Target:  5'- gGCCCCGGggGCCGGACaGGccUCCUccGcGACGg -3'
miRNA:   3'- -CGGGGCU--UGGUCUG-CU--AGGA--C-CUGUu -5'
9244 5' -56.1 NC_002512.2 + 193469 0.66 0.939112
Target:  5'- gGCCCuccgggaCGAGgcCCAcGACGG-CCUGGACGAc -3'
miRNA:   3'- -CGGG-------GCUU--GGU-CUGCUaGGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 131575 0.66 0.939573
Target:  5'- gGCCCCGAGCCccucgggaaAGACG-UCCUucaGCGAg -3'
miRNA:   3'- -CGGGGCUUGG---------UCUGCuAGGAcc-UGUU- -5'
9244 5' -56.1 NC_002512.2 + 228002 0.66 0.939573
Target:  5'- gGgCCgGAGCCGGACGGgaCgcgGGACGAg -3'
miRNA:   3'- -CgGGgCUUGGUCUGCUagGa--CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 138692 0.66 0.939573
Target:  5'- uGCCCCGGGuggcggucucCCuGACccgGAUCCgcaGGACAAa -3'
miRNA:   3'- -CGGGGCUU----------GGuCUG---CUAGGa--CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 143677 0.66 0.939573
Target:  5'- uCCCCGaAGCCGGGCGGggugUC-GGGCAc -3'
miRNA:   3'- cGGGGC-UUGGUCUGCUa---GGaCCUGUu -5'
9244 5' -56.1 NC_002512.2 + 154457 0.66 0.939573
Target:  5'- cGCCCCGAuCCGGACGucccgcccUCgaGGAgGc -3'
miRNA:   3'- -CGGGGCUuGGUCUGCu-------AGgaCCUgUu -5'
9244 5' -56.1 NC_002512.2 + 141715 0.66 0.952377
Target:  5'- cGUCCCGGACgC-GACcGUCCcGGGCGAc -3'
miRNA:   3'- -CGGGGCUUG-GuCUGcUAGGaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 95513 0.66 0.944064
Target:  5'- cGUCCCGGACCu--CGAacagcUCgUGGACGGu -3'
miRNA:   3'- -CGGGGCUUGGucuGCU-----AGgACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 108479 0.66 0.944064
Target:  5'- cGCgCUGAACguGACGGUCgUcaaGGGCGAg -3'
miRNA:   3'- -CGgGGCUUGguCUGCUAGgA---CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 195746 0.66 0.945798
Target:  5'- cGCUCCGAggucgucgGCCGGAUccuggggaccaacguGAgCCUGGACGu -3'
miRNA:   3'- -CGGGGCU--------UGGUCUG---------------CUaGGACCUGUu -5'
9244 5' -56.1 NC_002512.2 + 124950 0.66 0.948331
Target:  5'- cGCgCCGAcGCCGGACGAggaggCCgucgcGGACu- -3'
miRNA:   3'- -CGgGGCU-UGGUCUGCUa----GGa----CCUGuu -5'
9244 5' -56.1 NC_002512.2 + 186964 0.66 0.948331
Target:  5'- cCCCCGcucCCGGGCcGUCCUGG-CGGu -3'
miRNA:   3'- cGGGGCuu-GGUCUGcUAGGACCuGUU- -5'
9244 5' -56.1 NC_002512.2 + 95740 0.66 0.951982
Target:  5'- uCCCCGccGGCCGggacgcgcgccgcGACGGccgCCUGGACGGg -3'
miRNA:   3'- cGGGGC--UUGGU-------------CUGCUa--GGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 123683 0.66 0.951982
Target:  5'- gGCCgCGGACCGGAUGAUcgccaacCCgaaGGACc- -3'
miRNA:   3'- -CGGgGCUUGGUCUGCUA-------GGa--CCUGuu -5'
9244 5' -56.1 NC_002512.2 + 194656 0.66 0.952377
Target:  5'- uCUCCG-AUCGGGCGGUCCUGcACGc -3'
miRNA:   3'- cGGGGCuUGGUCUGCUAGGACcUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.