miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9244 5' -56.1 NC_002512.2 + 1489 0.69 0.845514
Target:  5'- cGCCCCGucccCCGGACaGAUCaCgccGGACAc -3'
miRNA:   3'- -CGGGGCuu--GGUCUG-CUAG-Ga--CCUGUu -5'
9244 5' -56.1 NC_002512.2 + 3569 0.68 0.898039
Target:  5'- cGUCCCGAGCCAcggcccacaggccccGGgGGUCUcggGGACAGg -3'
miRNA:   3'- -CGGGGCUUGGU---------------CUgCUAGGa--CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 7288 0.66 0.956204
Target:  5'- gGCCCCGGggGCCGGACaGGccUCCUccGcGACGg -3'
miRNA:   3'- -CGGGGCU--UGGUCUG-CU--AGGA--C-CUGUu -5'
9244 5' -56.1 NC_002512.2 + 10186 0.71 0.768417
Target:  5'- cGCCCCGAGCgCcGACGcuccuccucGUCCUcGGGCGg -3'
miRNA:   3'- -CGGGGCUUG-GuCUGC---------UAGGA-CCUGUu -5'
9244 5' -56.1 NC_002512.2 + 10626 0.67 0.907867
Target:  5'- cGCCCCcuGCCGGACGAgcagCCaGaGGCGg -3'
miRNA:   3'- -CGGGGcuUGGUCUGCUa---GGaC-CUGUu -5'
9244 5' -56.1 NC_002512.2 + 11394 0.69 0.853253
Target:  5'- cGgCUCGGACgCGGACGAcCCgcgGGACGAg -3'
miRNA:   3'- -CgGGGCUUG-GUCUGCUaGGa--CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 11520 0.68 0.888978
Target:  5'- gGCCCgggaGAugCAGaACGGgaucgaCCUGGACGAg -3'
miRNA:   3'- -CGGGg---CUugGUC-UGCUa-----GGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 12998 0.68 0.888978
Target:  5'- uUCCUGAggaACCuGGCGAUCCUGaacGACGAc -3'
miRNA:   3'- cGGGGCU---UGGuCUGCUAGGAC---CUGUU- -5'
9244 5' -56.1 NC_002512.2 + 14198 0.67 0.934857
Target:  5'- uCCCCGAACCAGAaGGgcagCCgGuGACGGa -3'
miRNA:   3'- cGGGGCUUGGUCUgCUa---GGaC-CUGUU- -5'
9244 5' -56.1 NC_002512.2 + 16372 0.67 0.934857
Target:  5'- aCCCCGAcCCGGACGAcgcCCUcgaagucgacGGGCGc -3'
miRNA:   3'- cGGGGCUuGGUCUGCUa--GGA----------CCUGUu -5'
9244 5' -56.1 NC_002512.2 + 16887 0.72 0.68201
Target:  5'- gGCCCCGGGCCcGACGG-CCgcgGcGACGAu -3'
miRNA:   3'- -CGGGGCUUGGuCUGCUaGGa--C-CUGUU- -5'
9244 5' -56.1 NC_002512.2 + 19339 0.66 0.939573
Target:  5'- aCCUCGuacACCAGACGAUgCcGGACc- -3'
miRNA:   3'- cGGGGCu--UGGUCUGCUAgGaCCUGuu -5'
9244 5' -56.1 NC_002512.2 + 19687 0.68 0.893562
Target:  5'- cGUCUCGGACgauCAGACGGucgggacgcagugcUCCUGGAUGAa -3'
miRNA:   3'- -CGGGGCUUG---GUCUGCU--------------AGGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 21691 0.66 0.944064
Target:  5'- cGCCCCccgaucucaaGAGCCAGGCGAac--GGGCAu -3'
miRNA:   3'- -CGGGG----------CUUGGUCUGCUaggaCCUGUu -5'
9244 5' -56.1 NC_002512.2 + 23331 0.66 0.952377
Target:  5'- cGCCCCGGGCCGccGGCGGUgUacgagUGcGGCGAg -3'
miRNA:   3'- -CGGGGCUUGGU--CUGCUAgG-----AC-CUGUU- -5'
9244 5' -56.1 NC_002512.2 + 34823 0.66 0.944064
Target:  5'- uCCCCG-ACCGGACGAcCCUcccgcccgcGGGCc- -3'
miRNA:   3'- cGGGGCuUGGUCUGCUaGGA---------CCUGuu -5'
9244 5' -56.1 NC_002512.2 + 35840 0.72 0.721169
Target:  5'- cGCCCUcaccAGCCAGGCGG-CCUGGAUc- -3'
miRNA:   3'- -CGGGGc---UUGGUCUGCUaGGACCUGuu -5'
9244 5' -56.1 NC_002512.2 + 36729 0.7 0.81278
Target:  5'- cGCgCCGAuCCAGACGccggCCaGGACGAg -3'
miRNA:   3'- -CGgGGCUuGGUCUGCua--GGaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 38223 0.67 0.907867
Target:  5'- aGCCCCgGGACgCGGACGucuccgccGUCCUGGcuccgaucggGCGAg -3'
miRNA:   3'- -CGGGG-CUUG-GUCUGC--------UAGGACC----------UGUU- -5'
9244 5' -56.1 NC_002512.2 + 41329 0.67 0.934857
Target:  5'- uCCCCGAACaC-GACcgGAUCCgacGGACGAa -3'
miRNA:   3'- cGGGGCUUG-GuCUG--CUAGGa--CCUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.