miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9244 5' -56.1 NC_002512.2 + 90740 0.68 0.868153
Target:  5'- gGCCUCGAACCAGAgGAUgCCUaaaGuGACu- -3'
miRNA:   3'- -CGGGGCUUGGUCUgCUA-GGA---C-CUGuu -5'
9244 5' -56.1 NC_002512.2 + 52335 1.08 0.005013
Target:  5'- gGCCCCGAACCAGACGAUCCUGGACAAg -3'
miRNA:   3'- -CGGGGCUUGGUCUGCUAGGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 50593 0.74 0.562728
Target:  5'- cGCCCgCGGACUGGACGGugcgaUCCggGGACGAc -3'
miRNA:   3'- -CGGG-GCUUGGUCUGCU-----AGGa-CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 75209 0.69 0.83759
Target:  5'- cGCUCgGAGCCGGACGGUcgcCCgacgucGGACGGu -3'
miRNA:   3'- -CGGGgCUUGGUCUGCUA---GGa-----CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 1489 0.69 0.845514
Target:  5'- cGCCCCGucccCCGGACaGAUCaCgccGGACAc -3'
miRNA:   3'- -CGGGGCuu--GGUCUG-CUAG-Ga--CCUGUu -5'
9244 5' -56.1 NC_002512.2 + 16887 0.72 0.68201
Target:  5'- gGCCCCGGGCCcGACGG-CCgcgGcGACGAu -3'
miRNA:   3'- -CGGGGCUUGGuCUGCUaGGa--C-CUGUU- -5'
9244 5' -56.1 NC_002512.2 + 36729 0.7 0.81278
Target:  5'- cGCgCCGAuCCAGACGccggCCaGGACGAg -3'
miRNA:   3'- -CGgGGCUuGGUCUGCua--GGaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 71652 0.7 0.81278
Target:  5'- gGCCaCCGAGCCgaacuuGGGCGG-CCcGGACAGg -3'
miRNA:   3'- -CGG-GGCUUGG------UCUGCUaGGaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 44943 0.68 0.865968
Target:  5'- uGCuCUCGAGCCAGGCGGacuccgaacaccggUCCUcGGCGAa -3'
miRNA:   3'- -CG-GGGCUUGGUCUGCU--------------AGGAcCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 19687 0.68 0.893562
Target:  5'- cGUCUCGGACgauCAGACGGucgggacgcagugcUCCUGGAUGAa -3'
miRNA:   3'- -CGGGGCUUG---GUCUGCU--------------AGGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 7288 0.66 0.956204
Target:  5'- gGCCCCGGggGCCGGACaGGccUCCUccGcGACGg -3'
miRNA:   3'- -CGGGGCU--UGGUCUG-CU--AGGA--C-CUGUu -5'
9244 5' -56.1 NC_002512.2 + 94987 0.71 0.762878
Target:  5'- cGCCCCGucgauCCGGAUGAggacgcgucgcgucgUCCgGGGCAGg -3'
miRNA:   3'- -CGGGGCuu---GGUCUGCU---------------AGGaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 35840 0.72 0.721169
Target:  5'- cGCCCUcaccAGCCAGGCGG-CCUGGAUc- -3'
miRNA:   3'- -CGGGGc---UUGGUCUGCUaGGACCUGuu -5'
9244 5' -56.1 NC_002512.2 + 113442 0.69 0.853253
Target:  5'- uCCCCGAGCUggguGGCGAUCaggUGGACc- -3'
miRNA:   3'- cGGGGCUUGGu---CUGCUAGg--ACCUGuu -5'
9244 5' -56.1 NC_002512.2 + 55106 0.69 0.856295
Target:  5'- uGCuCCUGGACgAGuucgcggagacggacGCGGUCCUGGACc- -3'
miRNA:   3'- -CG-GGGCUUGgUC---------------UGCUAGGACCUGuu -5'
9244 5' -56.1 NC_002512.2 + 10186 0.71 0.768417
Target:  5'- cGCCCCGAGCgCcGACGcuccuccucGUCCUcGGGCGg -3'
miRNA:   3'- -CGGGGCUUG-GuCUGC---------UAGGA-CCUGUu -5'
9244 5' -56.1 NC_002512.2 + 11520 0.68 0.888978
Target:  5'- gGCCCgggaGAugCAGaACGGgaucgaCCUGGACGAg -3'
miRNA:   3'- -CGGGg---CUugGUC-UGCUa-----GGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 3569 0.68 0.898039
Target:  5'- cGUCCCGAGCCAcggcccacaggccccGGgGGUCUcggGGACAGg -3'
miRNA:   3'- -CGGGGCUUGGU---------------CUgCUAGGa--CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 51211 0.7 0.81278
Target:  5'- gGCCUCGGACguGuCGcaCCUGGACGAc -3'
miRNA:   3'- -CGGGGCUUGguCuGCuaGGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 11394 0.69 0.853253
Target:  5'- cGgCUCGGACgCGGACGAcCCgcgGGACGAg -3'
miRNA:   3'- -CgGGGCUUG-GUCUGCUaGGa--CCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.