miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9244 5' -56.1 NC_002512.2 + 52335 1.08 0.005013
Target:  5'- gGCCCCGAACCAGACGAUCCUGGACAAg -3'
miRNA:   3'- -CGGGGCUUGGUCUGCUAGGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 50593 0.74 0.562728
Target:  5'- cGCCCgCGGACUGGACGGugcgaUCCggGGACGAc -3'
miRNA:   3'- -CGGG-GCUUGGUCUGCU-----AGGa-CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 95126 0.73 0.642221
Target:  5'- cGCCgaCGAACCGGACGGUCCgccccGGCGGg -3'
miRNA:   3'- -CGGg-GCUUGGUCUGCUAGGac---CUGUU- -5'
9244 5' -56.1 NC_002512.2 + 110126 0.73 0.652199
Target:  5'- aCCCCGGACCAGAacgaGAUCCU--GCAGc -3'
miRNA:   3'- cGGGGCUUGGUCUg---CUAGGAccUGUU- -5'
9244 5' -56.1 NC_002512.2 + 158610 0.73 0.652199
Target:  5'- cGCuCCCGGGuCCuGGCGGcCCUGGACGg -3'
miRNA:   3'- -CG-GGGCUU-GGuCUGCUaGGACCUGUu -5'
9244 5' -56.1 NC_002512.2 + 16887 0.72 0.68201
Target:  5'- gGCCCCGGGCCcGACGG-CCgcgGcGACGAu -3'
miRNA:   3'- -CGGGGCUUGGuCUGCUaGGa--C-CUGUU- -5'
9244 5' -56.1 NC_002512.2 + 118418 0.72 0.68201
Target:  5'- aGCCaacugaaGGGCCGGGCGAcgucCCUGGACGAg -3'
miRNA:   3'- -CGGgg-----CUUGGUCUGCUa---GGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 138987 0.72 0.690894
Target:  5'- cGCCaguccggCCGucCCGGACGAUCC-GGACGAg -3'
miRNA:   3'- -CGG-------GGCuuGGUCUGCUAGGaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 145913 0.72 0.711467
Target:  5'- cGCCCCGcGCCGGGC-AUCCgccgccgGGACu- -3'
miRNA:   3'- -CGGGGCuUGGUCUGcUAGGa------CCUGuu -5'
9244 5' -56.1 NC_002512.2 + 122758 0.72 0.711467
Target:  5'- gGCgCCCGGGCCGGAgGA-CgaGGACGAg -3'
miRNA:   3'- -CG-GGGCUUGGUCUgCUaGgaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 35840 0.72 0.721169
Target:  5'- cGCCCUcaccAGCCAGGCGG-CCUGGAUc- -3'
miRNA:   3'- -CGGGGc---UUGGUCUGCUaGGACCUGuu -5'
9244 5' -56.1 NC_002512.2 + 211933 0.71 0.759164
Target:  5'- aCCCCG-ACgGGACG-UCCgUGGACGAg -3'
miRNA:   3'- cGGGGCuUGgUCUGCuAGG-ACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 94987 0.71 0.762878
Target:  5'- cGCCCCGucgauCCGGAUGAggacgcgucgcgucgUCCgGGGCAGg -3'
miRNA:   3'- -CGGGGCuu---GGUCUGCU---------------AGGaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 10186 0.71 0.768417
Target:  5'- cGCCCCGAGCgCcGACGcuccuccucGUCCUcGGGCGg -3'
miRNA:   3'- -CGGGGCUUG-GuCUGC---------UAGGA-CCUGUu -5'
9244 5' -56.1 NC_002512.2 + 95583 0.7 0.810219
Target:  5'- gGCCCCGGcgacguCCucgaAGACGAUCCUccgggaccccgcgcGGACGAc -3'
miRNA:   3'- -CGGGGCUu-----GG----UCUGCUAGGA--------------CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 111681 0.7 0.81278
Target:  5'- gGCCCCGucgcACCAGACGG-CCUcGGGg-- -3'
miRNA:   3'- -CGGGGCu---UGGUCUGCUaGGA-CCUguu -5'
9244 5' -56.1 NC_002512.2 + 71652 0.7 0.81278
Target:  5'- gGCCaCCGAGCCgaacuuGGGCGG-CCcGGACAGg -3'
miRNA:   3'- -CGG-GGCUUGG------UCUGCUaGGaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 36729 0.7 0.81278
Target:  5'- cGCgCCGAuCCAGACGccggCCaGGACGAg -3'
miRNA:   3'- -CGgGGCUuGGUCUGCua--GGaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 51211 0.7 0.81278
Target:  5'- gGCCUCGGACguGuCGcaCCUGGACGAc -3'
miRNA:   3'- -CGGGGCUUGguCuGCuaGGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 118850 0.69 0.829489
Target:  5'- -----cAACCAGAUGGUCCUGGGCAu -3'
miRNA:   3'- cggggcUUGGUCUGCUAGGACCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.