miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 3' -51.3 NC_002512.2 + 132731 0.66 0.997766
Target:  5'- gGCGAGCAGGaCGCCgugucgcccaGGCagcugauguccugcgUCGACUGg -3'
miRNA:   3'- -UGCUUGUUC-GUGGaug-------CCG---------------AGUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 141293 0.66 0.997688
Target:  5'- cGCGcGCAcggcGGCACCgGCGGCgaCGACg- -3'
miRNA:   3'- -UGCuUGU----UCGUGGaUGCCGa-GUUGac -5'
9246 3' -51.3 NC_002512.2 + 134323 0.66 0.997688
Target:  5'- gACGGACAGGgACCUGCuGaaCGACa- -3'
miRNA:   3'- -UGCUUGUUCgUGGAUGcCgaGUUGac -5'
9246 3' -51.3 NC_002512.2 + 99892 0.66 0.997688
Target:  5'- cACGGGCAcgcGGCGCCgcCGGCgcuccCGGCg- -3'
miRNA:   3'- -UGCUUGU---UCGUGGauGCCGa----GUUGac -5'
9246 3' -51.3 NC_002512.2 + 124283 0.66 0.997688
Target:  5'- uCGGACccGgGCgUGCGGCUCGACc- -3'
miRNA:   3'- uGCUUGuuCgUGgAUGCCGAGUUGac -5'
9246 3' -51.3 NC_002512.2 + 23487 0.66 0.997688
Target:  5'- cCGAGCAuGCuggugCUGCGGUUCgAGCUGu -3'
miRNA:   3'- uGCUUGUuCGug---GAUGCCGAG-UUGAC- -5'
9246 3' -51.3 NC_002512.2 + 94545 0.66 0.997264
Target:  5'- gACGGcCAgcAGCACCc-CGGCgCGGCUGa -3'
miRNA:   3'- -UGCUuGU--UCGUGGauGCCGaGUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 149698 0.66 0.997264
Target:  5'- cGCGGACGacAGCAgCaGCGGCagCAGCg- -3'
miRNA:   3'- -UGCUUGU--UCGUgGaUGCCGa-GUUGac -5'
9246 3' -51.3 NC_002512.2 + 207602 0.66 0.997264
Target:  5'- uGCGAcgGCGgcGGCugCUGCGGCggcgaguuccUCGGCg- -3'
miRNA:   3'- -UGCU--UGU--UCGugGAUGCCG----------AGUUGac -5'
9246 3' -51.3 NC_002512.2 + 98563 0.66 0.997264
Target:  5'- cGCGGauccgGCGGGCGCCUcggGCGGCgggUCGuccgcGCUGc -3'
miRNA:   3'- -UGCU-----UGUUCGUGGA---UGCCG---AGU-----UGAC- -5'
9246 3' -51.3 NC_002512.2 + 120607 0.66 0.996979
Target:  5'- -aGAGCGGGCGCCggugagagcgggagGCGGCggGACg- -3'
miRNA:   3'- ugCUUGUUCGUGGa-------------UGCCGagUUGac -5'
9246 3' -51.3 NC_002512.2 + 103204 0.66 0.996776
Target:  5'- gGCGAGCGggGGUAuCCgagGCGGCUCGc--- -3'
miRNA:   3'- -UGCUUGU--UCGU-GGa--UGCCGAGUugac -5'
9246 3' -51.3 NC_002512.2 + 113719 0.66 0.996776
Target:  5'- -gGAACucgcccGGCGCCaGCGGCUCGGg-- -3'
miRNA:   3'- ugCUUGu-----UCGUGGaUGCCGAGUUgac -5'
9246 3' -51.3 NC_002512.2 + 22901 0.66 0.996219
Target:  5'- cGCGGgccACGGGCAUCccggGCGGCUUcuuccuGCUGa -3'
miRNA:   3'- -UGCU---UGUUCGUGGa---UGCCGAGu-----UGAC- -5'
9246 3' -51.3 NC_002512.2 + 202341 0.66 0.996219
Target:  5'- cACGcuACuuAGCGCC--CGGCUCGAUUGg -3'
miRNA:   3'- -UGCu-UGu-UCGUGGauGCCGAGUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 190660 0.66 0.996219
Target:  5'- gACGGuacaguCGGGaCACCUGCGGCUgGAg-- -3'
miRNA:   3'- -UGCUu-----GUUC-GUGGAUGCCGAgUUgac -5'
9246 3' -51.3 NC_002512.2 + 192587 0.66 0.995584
Target:  5'- aGCGGACcgucccGCugCUGCGGCgcgcgCGGCg- -3'
miRNA:   3'- -UGCUUGuu----CGugGAUGCCGa----GUUGac -5'
9246 3' -51.3 NC_002512.2 + 184618 0.66 0.995584
Target:  5'- gACGAgcGCGAGCccccGCCgGCGGC-CGACg- -3'
miRNA:   3'- -UGCU--UGUUCG----UGGaUGCCGaGUUGac -5'
9246 3' -51.3 NC_002512.2 + 80810 0.66 0.995584
Target:  5'- aGCGcGCGcGCGCCU-CGGCgUCGGCg- -3'
miRNA:   3'- -UGCuUGUuCGUGGAuGCCG-AGUUGac -5'
9246 3' -51.3 NC_002512.2 + 165528 0.67 0.994866
Target:  5'- aACGGGCAgaccAGCACCgccgucauCGaGCUgGACUGc -3'
miRNA:   3'- -UGCUUGU----UCGUGGau------GC-CGAgUUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.