miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 3' -51.3 NC_002512.2 + 103664 0.68 0.982685
Target:  5'- gGCGGccACGAGCGCCUcgacgucgcagaggGCGGCggacgCGGCg- -3'
miRNA:   3'- -UGCU--UGUUCGUGGA--------------UGCCGa----GUUGac -5'
9246 3' -51.3 NC_002512.2 + 91419 0.67 0.994056
Target:  5'- gACGAGCgAGGUGCCgaacGCGGC-CAACc- -3'
miRNA:   3'- -UGCUUG-UUCGUGGa---UGCCGaGUUGac -5'
9246 3' -51.3 NC_002512.2 + 222383 0.67 0.9918
Target:  5'- gGCGGGCucuggcuccucaugGAGCGCC-GCGGCUuCGGCg- -3'
miRNA:   3'- -UGCUUG--------------UUCGUGGaUGCCGA-GUUGac -5'
9246 3' -51.3 NC_002512.2 + 220416 0.67 0.990993
Target:  5'- cGCGGGCccGCccGCCUACGGC-CAGCc- -3'
miRNA:   3'- -UGCUUGuuCG--UGGAUGCCGaGUUGac -5'
9246 3' -51.3 NC_002512.2 + 211707 0.67 0.990993
Target:  5'- cACGAGgAGcGCGCCUACGGggagcugugcCUCGGcCUGg -3'
miRNA:   3'- -UGCUUgUU-CGUGGAUGCC----------GAGUU-GAC- -5'
9246 3' -51.3 NC_002512.2 + 180445 0.67 0.990752
Target:  5'- cCGGGC-GGCGCCcgucauuucucgACGGCUCGGCg- -3'
miRNA:   3'- uGCUUGuUCGUGGa-----------UGCCGAGUUGac -5'
9246 3' -51.3 NC_002512.2 + 222665 0.68 0.98834
Target:  5'- cCGGGCcgagGGGCGCCU-CGaGUUCGACUGc -3'
miRNA:   3'- uGCUUG----UUCGUGGAuGC-CGAGUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 116880 0.68 0.986804
Target:  5'- cUGAACcugAAGCACCUGCuGCUgaAGCUGu -3'
miRNA:   3'- uGCUUG---UUCGUGGAUGcCGAg-UUGAC- -5'
9246 3' -51.3 NC_002512.2 + 161304 0.68 0.983271
Target:  5'- uACG-ACGAGCACCUguACGuGgUCAACa- -3'
miRNA:   3'- -UGCuUGUUCGUGGA--UGC-CgAGUUGac -5'
9246 3' -51.3 NC_002512.2 + 165528 0.67 0.994866
Target:  5'- aACGGGCAgaccAGCACCgccgucauCGaGCUgGACUGc -3'
miRNA:   3'- -UGCUUGU----UCGUGGau------GC-CGAgUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 192587 0.66 0.995584
Target:  5'- aGCGGACcgucccGCugCUGCGGCgcgcgCGGCg- -3'
miRNA:   3'- -UGCUUGuu----CGugGAUGCCGa----GUUGac -5'
9246 3' -51.3 NC_002512.2 + 184618 0.66 0.995584
Target:  5'- gACGAgcGCGAGCccccGCCgGCGGC-CGACg- -3'
miRNA:   3'- -UGCU--UGUUCG----UGGaUGCCGaGUUGac -5'
9246 3' -51.3 NC_002512.2 + 134323 0.66 0.997688
Target:  5'- gACGGACAGGgACCUGCuGaaCGACa- -3'
miRNA:   3'- -UGCUUGUUCgUGGAUGcCgaGUUGac -5'
9246 3' -51.3 NC_002512.2 + 99892 0.66 0.997688
Target:  5'- cACGGGCAcgcGGCGCCgcCGGCgcuccCGGCg- -3'
miRNA:   3'- -UGCUUGU---UCGUGGauGCCGa----GUUGac -5'
9246 3' -51.3 NC_002512.2 + 124283 0.66 0.997688
Target:  5'- uCGGACccGgGCgUGCGGCUCGACc- -3'
miRNA:   3'- uGCUUGuuCgUGgAUGCCGAGUUGac -5'
9246 3' -51.3 NC_002512.2 + 207602 0.66 0.997264
Target:  5'- uGCGAcgGCGgcGGCugCUGCGGCggcgaguuccUCGGCg- -3'
miRNA:   3'- -UGCU--UGU--UCGugGAUGCCG----------AGUUGac -5'
9246 3' -51.3 NC_002512.2 + 149698 0.66 0.997264
Target:  5'- cGCGGACGacAGCAgCaGCGGCagCAGCg- -3'
miRNA:   3'- -UGCUUGU--UCGUgGaUGCCGa-GUUGac -5'
9246 3' -51.3 NC_002512.2 + 94545 0.66 0.997264
Target:  5'- gACGGcCAgcAGCACCc-CGGCgCGGCUGa -3'
miRNA:   3'- -UGCUuGU--UCGUGGauGCCGaGUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 202341 0.66 0.996219
Target:  5'- cACGcuACuuAGCGCC--CGGCUCGAUUGg -3'
miRNA:   3'- -UGCu-UGu-UCGUGGauGCCGAGUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 190660 0.66 0.996219
Target:  5'- gACGGuacaguCGGGaCACCUGCGGCUgGAg-- -3'
miRNA:   3'- -UGCUu-----GUUC-GUGGAUGCCGAgUUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.