miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 5' -57.2 NC_002512.2 + 229579 0.67 0.91144
Target:  5'- gCGCCGGGAgGGACgGGggcgagaaggggccCGGGCGGa- -3'
miRNA:   3'- aGUGGUUCUaCCUGgCC--------------GCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 229550 0.68 0.846
Target:  5'- -aGCCGGGcgGGgcGCCGGCGGA-GGa- -3'
miRNA:   3'- agUGGUUCuaCC--UGGCCGCCUgCCac -5'
9249 5' -57.2 NC_002512.2 + 228469 0.72 0.663044
Target:  5'- aCGCCGAGggGGACCGaggggaccgaagacGCGGAgGGg- -3'
miRNA:   3'- aGUGGUUCuaCCUGGC--------------CGCCUgCCac -5'
9249 5' -57.2 NC_002512.2 + 227988 0.74 0.520287
Target:  5'- gCGCCGAGGgccgaGGGCCGGagcCGGACGGg- -3'
miRNA:   3'- aGUGGUUCUa----CCUGGCC---GCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 227217 0.72 0.66598
Target:  5'- -gACCAGGAggcggcGGACCgggaggcgcGGCGGACGGg- -3'
miRNA:   3'- agUGGUUCUa-----CCUGG---------CCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 226787 0.68 0.861024
Target:  5'- uUCAuuuuCCAGGgcGGAgaagaucucgUCGGCGGACGGg- -3'
miRNA:   3'- -AGU----GGUUCuaCCU----------GGCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 226490 0.68 0.861024
Target:  5'- aCGCCGugguccucuggGGAccugUGGGCCccgcggagcgGGCGGACGGUc -3'
miRNA:   3'- aGUGGU-----------UCU----ACCUGG----------CCGCCUGCCAc -5'
9249 5' -57.2 NC_002512.2 + 224122 0.67 0.907373
Target:  5'- -gACCAucucGGccGUGGACCcgcgccgggaGGCGGACGcGUGa -3'
miRNA:   3'- agUGGU----UC--UACCUGG----------CCGCCUGC-CAC- -5'
9249 5' -57.2 NC_002512.2 + 221594 0.66 0.91871
Target:  5'- -gACCcGGAgggGGGUCGGUGGACGGc- -3'
miRNA:   3'- agUGGuUCUa--CCUGGCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 220309 0.69 0.796844
Target:  5'- cCGCCGGGGggccggGGGCCGGgcuccggggggcCGGACGGc- -3'
miRNA:   3'- aGUGGUUCUa-----CCUGGCC------------GCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 217779 0.73 0.587528
Target:  5'- gUCGCCGGGGUcGcGGCCGGCuGGCGGa- -3'
miRNA:   3'- -AGUGGUUCUA-C-CUGGCCGcCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 216223 0.66 0.938745
Target:  5'- cUCGuCCGGGAgcUGGAgcCgCGGCGaGACGGUc -3'
miRNA:   3'- -AGU-GGUUCU--ACCU--G-GCCGC-CUGCCAc -5'
9249 5' -57.2 NC_002512.2 + 204836 0.66 0.934066
Target:  5'- cCGuCCGGGA-GGACgaCGGCGGuCGGUc -3'
miRNA:   3'- aGU-GGUUCUaCCUG--GCCGCCuGCCAc -5'
9249 5' -57.2 NC_002512.2 + 201686 0.66 0.934066
Target:  5'- -aACgAGGAgGGACCGGaGGugGuGUGg -3'
miRNA:   3'- agUGgUUCUaCCUGGCCgCCugC-CAC- -5'
9249 5' -57.2 NC_002512.2 + 193160 0.66 0.943205
Target:  5'- -gGCCGGcGucUGGAUCGGCGcGAUGGUc -3'
miRNA:   3'- agUGGUU-Cu-ACCUGGCCGC-CUGCCAc -5'
9249 5' -57.2 NC_002512.2 + 188929 0.66 0.924049
Target:  5'- gUC-CCGguGGcgGGGCgCGGCGGuCGGUu -3'
miRNA:   3'- -AGuGGU--UCuaCCUG-GCCGCCuGCCAc -5'
9249 5' -57.2 NC_002512.2 + 184739 0.69 0.813856
Target:  5'- gCAUCGAcGAcgugaGGAUCGGCGGGCGGc- -3'
miRNA:   3'- aGUGGUU-CUa----CCUGGCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 184545 0.73 0.597298
Target:  5'- -aGCCGGcGGcgcGGGCCGGCGGACGGc- -3'
miRNA:   3'- agUGGUU-CUa--CCUGGCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 179635 0.69 0.796844
Target:  5'- uUCACCAcAGcUGGAUCGGC-GACGGc- -3'
miRNA:   3'- -AGUGGU-UCuACCUGGCCGcCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 170761 0.71 0.733397
Target:  5'- cUCGCCGGGAUGGAgCGcGaCGGGCGcGa- -3'
miRNA:   3'- -AGUGGUUCUACCUgGC-C-GCCUGC-Cac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.