miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 5' -57.2 NC_002512.2 + 140625 0.68 0.868254
Target:  5'- aUCGCCA---UGGuAUCGGCG-ACGGUGa -3'
miRNA:   3'- -AGUGGUucuACC-UGGCCGCcUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 229579 0.67 0.91144
Target:  5'- gCGCCGGGAgGGACgGGggcgagaaggggccCGGGCGGa- -3'
miRNA:   3'- aGUGGUUCUaCCUGgCC--------------GCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 176 0.67 0.91144
Target:  5'- gCGCCGGGAgGGACgGGggcgagaaggggccCGGGCGGa- -3'
miRNA:   3'- aGUGGUUCUaCCUGgCC--------------GCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 224122 0.67 0.907373
Target:  5'- -gACCAucucGGccGUGGACCcgcgccgggaGGCGGACGcGUGa -3'
miRNA:   3'- agUGGU----UC--UACCUGG----------CCGCCUGC-CAC- -5'
9249 5' -57.2 NC_002512.2 + 147393 0.67 0.901379
Target:  5'- aCGCCAugcAGA-GGACCGGCGucaaACGGc- -3'
miRNA:   3'- aGUGGU---UCUaCCUGGCCGCc---UGCCac -5'
9249 5' -57.2 NC_002512.2 + 116758 0.67 0.900768
Target:  5'- -gACCAGGccagccgcuguucGUGGACgGGCGG-CGGa- -3'
miRNA:   3'- agUGGUUC-------------UACCUGgCCGCCuGCCac -5'
9249 5' -57.2 NC_002512.2 + 165968 0.67 0.89517
Target:  5'- uUCACCAAGcUGcGGCgGgGCGGuCGGUu -3'
miRNA:   3'- -AGUGGUUCuAC-CUGgC-CGCCuGCCAc -5'
9249 5' -57.2 NC_002512.2 + 112912 0.68 0.875288
Target:  5'- cCGCCcGGAcgGGGCguCGGCGGccCGGUGg -3'
miRNA:   3'- aGUGGuUCUa-CCUG--GCCGCCu-GCCAC- -5'
9249 5' -57.2 NC_002512.2 + 147683 0.68 0.868254
Target:  5'- cCGCCccGGGA-GGACgccggccgaCGGCGGACGGg- -3'
miRNA:   3'- aGUGG--UUCUaCCUG---------GCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 158538 0.67 0.913151
Target:  5'- gUCACCcggcuGGUGGACCuGCuGGugGGc- -3'
miRNA:   3'- -AGUGGuu---CUACCUGGcCG-CCugCCac -5'
9249 5' -57.2 NC_002512.2 + 118963 0.67 0.913151
Target:  5'- cCACCGAGAgcgcGGcCCuGGUG-ACGGUGg -3'
miRNA:   3'- aGUGGUUCUa---CCuGG-CCGCcUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 82364 0.66 0.917615
Target:  5'- gCGCCucgcgccgGGAUCGGCGGgACGGg- -3'
miRNA:   3'- aGUGGuucua---CCUGGCCGCC-UGCCac -5'
9249 5' -57.2 NC_002512.2 + 216223 0.66 0.938745
Target:  5'- cUCGuCCGGGAgcUGGAgcCgCGGCGaGACGGUc -3'
miRNA:   3'- -AGU-GGUUCU--ACCU--G-GCCGC-CUGCCAc -5'
9249 5' -57.2 NC_002512.2 + 204836 0.66 0.934066
Target:  5'- cCGuCCGGGA-GGACgaCGGCGGuCGGUc -3'
miRNA:   3'- aGU-GGUUCUaCCUG--GCCGCCuGCCAc -5'
9249 5' -57.2 NC_002512.2 + 92987 0.66 0.934066
Target:  5'- gUCGCCcgaccuGGUGG-CCgucucgguGGCGGACGGg- -3'
miRNA:   3'- -AGUGGuu----CUACCuGG--------CCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 131668 0.66 0.929168
Target:  5'- -gAgCAGGA-GGGCCGcGaGGGCGGUGa -3'
miRNA:   3'- agUgGUUCUaCCUGGC-CgCCUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 90482 0.66 0.925608
Target:  5'- aUCACCGgggcguccucgacgGGAUcGGggccgagGCCGGCGGcggacgacgggaacGCGGUGg -3'
miRNA:   3'- -AGUGGU--------------UCUA-CC-------UGGCCGCC--------------UGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 188929 0.66 0.924049
Target:  5'- gUC-CCGguGGcgGGGCgCGGCGGuCGGUu -3'
miRNA:   3'- -AGuGGU--UCuaCCUG-GCCGCCuGCCAc -5'
9249 5' -57.2 NC_002512.2 + 221594 0.66 0.91871
Target:  5'- -gACCcGGAgggGGGUCGGUGGACGGc- -3'
miRNA:   3'- agUGGuUCUa--CCUGGCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 132993 0.66 0.91871
Target:  5'- gCGCCAGGAcGGGCCauGGCcgccGACGGa- -3'
miRNA:   3'- aGUGGUUCUaCCUGG--CCGc---CUGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.