miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9252 5' -65.7 NC_002512.2 + 148596 0.66 0.674747
Target:  5'- aCCC---ACCCCGcaGGCCCGGACCg- -3'
miRNA:   3'- gGGGcucUGGGGCc-CUGGGCCUGGgc -5'
9252 5' -65.7 NC_002512.2 + 135633 0.66 0.674747
Target:  5'- uUCUCGGGGgUCCGGGuCgCCGGcgGCCUGa -3'
miRNA:   3'- -GGGGCUCUgGGGCCCuG-GGCC--UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 76876 0.66 0.674747
Target:  5'- cUCCCGccGACCcgaCCGGGGaccgcuCCCGccGACCCGa -3'
miRNA:   3'- -GGGGCu-CUGG---GGCCCU------GGGC--CUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 130278 0.66 0.674747
Target:  5'- aCCgCGAcGAgCgCGGGGCCCGGGacgugCCGu -3'
miRNA:   3'- -GGgGCU-CUgGgGCCCUGGGCCUg----GGC- -5'
9252 5' -65.7 NC_002512.2 + 21293 0.66 0.674747
Target:  5'- aCCUCGA--CCUCGu--CCCGGACCCGc -3'
miRNA:   3'- -GGGGCUcuGGGGCccuGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 10540 0.66 0.674747
Target:  5'- aCCUCGcGGACgCCGGGcaGCCggCGGGCCaCGc -3'
miRNA:   3'- -GGGGC-UCUGgGGCCC--UGG--GCCUGG-GC- -5'
9252 5' -65.7 NC_002512.2 + 118038 0.66 0.674747
Target:  5'- aCCaagGAGGCCgUGGcccguGCCCGGGCUCGa -3'
miRNA:   3'- gGGg--CUCUGGgGCCc----UGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 76728 0.66 0.674747
Target:  5'- gCCCCGuAGgucGCCuuuCCGGaccgcGACCCGGaucGCCCGu -3'
miRNA:   3'- -GGGGC-UC---UGG---GGCC-----CUGGGCC---UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 29669 0.66 0.674747
Target:  5'- uCCUCG-GGCUCCGGcuCCuCGGGCUCGu -3'
miRNA:   3'- -GGGGCuCUGGGGCCcuGG-GCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 11221 0.66 0.674747
Target:  5'- gCCCGGuGugCCCGGGuAUCCGccUCCGu -3'
miRNA:   3'- gGGGCU-CugGGGCCC-UGGGCcuGGGC- -5'
9252 5' -65.7 NC_002512.2 + 216589 0.66 0.674747
Target:  5'- -gCC-AGGCCCUGGGugucgAUCCGGACCg- -3'
miRNA:   3'- ggGGcUCUGGGGCCC-----UGGGCCUGGgc -5'
9252 5' -65.7 NC_002512.2 + 116933 0.66 0.674747
Target:  5'- gCCCGAcGACUCgGGGcucgACCgGGGCgCCa -3'
miRNA:   3'- gGGGCU-CUGGGgCCC----UGGgCCUG-GGc -5'
9252 5' -65.7 NC_002512.2 + 83794 0.66 0.673841
Target:  5'- gCCgCCGAgGACCgcgucgggcgcgCCGGcGGCggcggcuCCGGGCCCGg -3'
miRNA:   3'- -GG-GGCU-CUGG------------GGCC-CUG-------GGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 177106 0.66 0.673841
Target:  5'- uCUCCGcGACCaggagguCCGGGugcGCCagcaGGGCCCGc -3'
miRNA:   3'- -GGGGCuCUGG-------GGCCC---UGGg---CCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 82602 0.66 0.673841
Target:  5'- cCCCCGGGAacgacgcgcggcgUCCCGGG-UCgGGuuuCCCa -3'
miRNA:   3'- -GGGGCUCU-------------GGGGCCCuGGgCCu--GGGc -5'
9252 5' -65.7 NC_002512.2 + 97411 0.66 0.673841
Target:  5'- aCgCgGAGG-CCgGGGAgagacgcgcgcucCCCGGACCCGc -3'
miRNA:   3'- -GgGgCUCUgGGgCCCU-------------GGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 30247 0.66 0.673841
Target:  5'- uCCgCGGGAaacggguCCCCGcGGACgCgCGGAgCCGg -3'
miRNA:   3'- -GGgGCUCU-------GGGGC-CCUG-G-GCCUgGGC- -5'
9252 5' -65.7 NC_002512.2 + 63272 0.66 0.672935
Target:  5'- uUCCCGgacgcGGAgCCCUGGGACCCcuccuucuccaGCCCGu -3'
miRNA:   3'- -GGGGC-----UCU-GGGGCCCUGGGcc---------UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 210214 0.66 0.665674
Target:  5'- gUCCGAGA---CGGaGACgCGGACCCGa -3'
miRNA:   3'- gGGGCUCUgggGCC-CUGgGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 209249 0.66 0.665674
Target:  5'- gUCCCG-GGCCCgcuCGGcGAaCCGGACCUc -3'
miRNA:   3'- -GGGGCuCUGGG---GCC-CUgGGCCUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.