Results 1 - 20 of 358 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9252 | 5' | -65.7 | NC_002512.2 | + | 216589 | 0.66 | 0.674747 |
Target: 5'- -gCC-AGGCCCUGGGugucgAUCCGGACCg- -3' miRNA: 3'- ggGGcUCUGGGGCCC-----UGGGCCUGGgc -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 135633 | 0.66 | 0.674747 |
Target: 5'- uUCUCGGGGgUCCGGGuCgCCGGcgGCCUGa -3' miRNA: 3'- -GGGGCUCUgGGGCCCuG-GGCC--UGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 21293 | 0.66 | 0.674747 |
Target: 5'- aCCUCGA--CCUCGu--CCCGGACCCGc -3' miRNA: 3'- -GGGGCUcuGGGGCccuGGGCCUGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 11221 | 0.66 | 0.674747 |
Target: 5'- gCCCGGuGugCCCGGGuAUCCGccUCCGu -3' miRNA: 3'- gGGGCU-CugGGGCCC-UGGGCcuGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 76728 | 0.66 | 0.674747 |
Target: 5'- gCCCCGuAGgucGCCuuuCCGGaccgcGACCCGGaucGCCCGu -3' miRNA: 3'- -GGGGC-UC---UGG---GGCC-----CUGGGCC---UGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 10540 | 0.66 | 0.674747 |
Target: 5'- aCCUCGcGGACgCCGGGcaGCCggCGGGCCaCGc -3' miRNA: 3'- -GGGGC-UCUGgGGCCC--UGG--GCCUGG-GC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 29669 | 0.66 | 0.674747 |
Target: 5'- uCCUCG-GGCUCCGGcuCCuCGGGCUCGu -3' miRNA: 3'- -GGGGCuCUGGGGCCcuGG-GCCUGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 76876 | 0.66 | 0.674747 |
Target: 5'- cUCCCGccGACCcgaCCGGGGaccgcuCCCGccGACCCGa -3' miRNA: 3'- -GGGGCu-CUGG---GGCCCU------GGGC--CUGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 118038 | 0.66 | 0.674747 |
Target: 5'- aCCaagGAGGCCgUGGcccguGCCCGGGCUCGa -3' miRNA: 3'- gGGg--CUCUGGgGCCc----UGGGCCUGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 130278 | 0.66 | 0.674747 |
Target: 5'- aCCgCGAcGAgCgCGGGGCCCGGGacgugCCGu -3' miRNA: 3'- -GGgGCU-CUgGgGCCCUGGGCCUg----GGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 116933 | 0.66 | 0.674747 |
Target: 5'- gCCCGAcGACUCgGGGcucgACCgGGGCgCCa -3' miRNA: 3'- gGGGCU-CUGGGgCCC----UGGgCCUG-GGc -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 148596 | 0.66 | 0.674747 |
Target: 5'- aCCC---ACCCCGcaGGCCCGGACCg- -3' miRNA: 3'- gGGGcucUGGGGCc-CUGGGCCUGGgc -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 82602 | 0.66 | 0.673841 |
Target: 5'- cCCCCGGGAacgacgcgcggcgUCCCGGG-UCgGGuuuCCCa -3' miRNA: 3'- -GGGGCUCU-------------GGGGCCCuGGgCCu--GGGc -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 97411 | 0.66 | 0.673841 |
Target: 5'- aCgCgGAGG-CCgGGGAgagacgcgcgcucCCCGGACCCGc -3' miRNA: 3'- -GgGgCUCUgGGgCCCU-------------GGGCCUGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 177106 | 0.66 | 0.673841 |
Target: 5'- uCUCCGcGACCaggagguCCGGGugcGCCagcaGGGCCCGc -3' miRNA: 3'- -GGGGCuCUGG-------GGCCC---UGGg---CCUGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 83794 | 0.66 | 0.673841 |
Target: 5'- gCCgCCGAgGACCgcgucgggcgcgCCGGcGGCggcggcuCCGGGCCCGg -3' miRNA: 3'- -GG-GGCU-CUGG------------GGCC-CUG-------GGCCUGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 30247 | 0.66 | 0.673841 |
Target: 5'- uCCgCGGGAaacggguCCCCGcGGACgCgCGGAgCCGg -3' miRNA: 3'- -GGgGCUCU-------GGGGC-CCUG-G-GCCUgGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 63272 | 0.66 | 0.672935 |
Target: 5'- uUCCCGgacgcGGAgCCCUGGGACCCcuccuucuccaGCCCGu -3' miRNA: 3'- -GGGGC-----UCU-GGGGCCCUGGGcc---------UGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 51027 | 0.66 | 0.665674 |
Target: 5'- aUCUCGAgguucagaguGACCCCGuGaagagaGCUCGGGCCCGg -3' miRNA: 3'- -GGGGCU----------CUGGGGCcC------UGGGCCUGGGC- -5' |
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9252 | 5' | -65.7 | NC_002512.2 | + | 209249 | 0.66 | 0.665674 |
Target: 5'- gUCCCG-GGCCCgcuCGGcGAaCCGGACCUc -3' miRNA: 3'- -GGGGCuCUGGG---GCC-CUgGGCCUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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