miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9258 3' -54.7 NC_002512.2 + 102734 0.65 0.984156
Target:  5'- gGCAGUccCGGAucacGAUCGgacuguaGGCCGUGacgGCGa -3'
miRNA:   3'- -CGUCA--GCCU----CUAGC-------UCGGCACga-UGC- -5'
9258 3' -54.7 NC_002512.2 + 89425 0.66 0.980494
Target:  5'- gGCGGcgugaCGGAGAgguggcgCGAGCUGUGUcggaagGCGa -3'
miRNA:   3'- -CGUCa----GCCUCUa------GCUCGGCACGa-----UGC- -5'
9258 3' -54.7 NC_002512.2 + 18676 0.66 0.980494
Target:  5'- --cGUCGGAGAggaaGAGCuCGUGg-GCGg -3'
miRNA:   3'- cguCAGCCUCUag--CUCG-GCACgaUGC- -5'
9258 3' -54.7 NC_002512.2 + 128839 0.66 0.980494
Target:  5'- cGCAGcugcaccgcUCGGGcgccGcgCGGGCCcugGUGCUGCGc -3'
miRNA:   3'- -CGUC---------AGCCU----CuaGCUCGG---CACGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 219235 0.66 0.980494
Target:  5'- -aGGUCGG-GAUCGugcucGGCCGccucugGCUGCu -3'
miRNA:   3'- cgUCAGCCuCUAGC-----UCGGCa-----CGAUGc -5'
9258 3' -54.7 NC_002512.2 + 118915 0.66 0.980494
Target:  5'- cGCuGUgGGAGAagGGGgaCGUGCUgACGg -3'
miRNA:   3'- -CGuCAgCCUCUagCUCg-GCACGA-UGC- -5'
9258 3' -54.7 NC_002512.2 + 190079 0.66 0.980494
Target:  5'- cGCGGcCGGucagCGGGCuCG-GCUGCGg -3'
miRNA:   3'- -CGUCaGCCucuaGCUCG-GCaCGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 32544 0.66 0.975993
Target:  5'- gGCAGUgGGGGAUCuucuccAGCCGccggGCgccGCGg -3'
miRNA:   3'- -CGUCAgCCUCUAGc-----UCGGCa---CGa--UGC- -5'
9258 3' -54.7 NC_002512.2 + 135317 0.66 0.975993
Target:  5'- gGCGGUCcccGAGGUCGgcgucAGCCGcgccggggUGCUGCu -3'
miRNA:   3'- -CGUCAGc--CUCUAGC-----UCGGC--------ACGAUGc -5'
9258 3' -54.7 NC_002512.2 + 108900 0.66 0.975993
Target:  5'- uGCcGUCGGGGccCGuucGCCGgUGCUGCu -3'
miRNA:   3'- -CGuCAGCCUCuaGCu--CGGC-ACGAUGc -5'
9258 3' -54.7 NC_002512.2 + 71977 0.66 0.973477
Target:  5'- cGCAGUUGGGGAacaugCG-GUCGUGgCaGCGg -3'
miRNA:   3'- -CGUCAGCCUCUa----GCuCGGCAC-GaUGC- -5'
9258 3' -54.7 NC_002512.2 + 130227 0.66 0.973477
Target:  5'- gGCGG-CGGGGAaccUCuGGGCCccggcGUGCUugGu -3'
miRNA:   3'- -CGUCaGCCUCU---AG-CUCGG-----CACGAugC- -5'
9258 3' -54.7 NC_002512.2 + 102122 0.67 0.967882
Target:  5'- gGCcGUCGGAGGggGAcccugGCCGU-CUACGg -3'
miRNA:   3'- -CGuCAGCCUCUagCU-----CGGCAcGAUGC- -5'
9258 3' -54.7 NC_002512.2 + 96280 0.67 0.964791
Target:  5'- gGCAGgCGGGGGggcugccgCGGGCCGccGCcGCGg -3'
miRNA:   3'- -CGUCaGCCUCUa-------GCUCGGCa-CGaUGC- -5'
9258 3' -54.7 NC_002512.2 + 28576 0.67 0.961496
Target:  5'- gGCAGaCGGAgcuGAUcCGAGCgGUGC-GCGu -3'
miRNA:   3'- -CGUCaGCCU---CUA-GCUCGgCACGaUGC- -5'
9258 3' -54.7 NC_002512.2 + 219885 0.67 0.957995
Target:  5'- cGgGGUCGGAGA-CGAGCCGaccGCc--- -3'
miRNA:   3'- -CgUCAGCCUCUaGCUCGGCa--CGaugc -5'
9258 3' -54.7 NC_002512.2 + 80012 0.67 0.957995
Target:  5'- gGCAGcCGGAGccggaCGAGgCGUcGCUGCu -3'
miRNA:   3'- -CGUCaGCCUCua---GCUCgGCA-CGAUGc -5'
9258 3' -54.7 NC_002512.2 + 131232 0.68 0.954281
Target:  5'- cGCGGUCGGAGGccgCGguGGCC-UGCaGCa -3'
miRNA:   3'- -CGUCAGCCUCUa--GC--UCGGcACGaUGc -5'
9258 3' -54.7 NC_002512.2 + 176448 0.68 0.95195
Target:  5'- cGCGGUCGGGGuGUCGGGuuCCGcgGCUcucuucuccuggaugGCGg -3'
miRNA:   3'- -CGUCAGCCUC-UAGCUC--GGCa-CGA---------------UGC- -5'
9258 3' -54.7 NC_002512.2 + 188917 0.68 0.950352
Target:  5'- cGCGGUCGGAGAguccCGguGGCgGgGCgcgGCGg -3'
miRNA:   3'- -CGUCAGCCUCUa---GC--UCGgCaCGa--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.