miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 12860 0.67 0.949858
Target:  5'- cGUGAC-GCUggaCaGGCUGCUGaAGCCg -3'
miRNA:   3'- uCGCUGuCGAa--GaCCGAUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 74558 0.67 0.949858
Target:  5'- cGGCGACgggAGCgaggUUGGCgagAUCGUccucGGCCa -3'
miRNA:   3'- -UCGCUG---UCGaa--GACCGa--UGGCA----UCGG- -5'
9278 5' -54.8 NC_002512.2 + 99937 0.67 0.949858
Target:  5'- cGGCGuCGGCUgCU-GCUGCCGccgguGCCu -3'
miRNA:   3'- -UCGCuGUCGAaGAcCGAUGGCau---CGG- -5'
9278 5' -54.8 NC_002512.2 + 130280 0.67 0.949858
Target:  5'- cGCGACgAGCgcggGGCccgggacgUGCCGUAcGCCg -3'
miRNA:   3'- uCGCUG-UCGaagaCCG--------AUGGCAU-CGG- -5'
9278 5' -54.8 NC_002512.2 + 152534 0.67 0.949445
Target:  5'- cGGCGACGGCgUUCcgacgaaGGCgaACCGUauuuagaGGCCu -3'
miRNA:   3'- -UCGCUGUCG-AAGa------CCGa-UGGCA-------UCGG- -5'
9278 5' -54.8 NC_002512.2 + 203121 0.67 0.945624
Target:  5'- gGGCGuCGGCcgagUCgugGGCcaucACCGUGGCg -3'
miRNA:   3'- -UCGCuGUCGa---AGa--CCGa---UGGCAUCGg -5'
9278 5' -54.8 NC_002512.2 + 153369 0.67 0.945624
Target:  5'- gGGCugGGCGGCggCUGGCgguCCGgAGCg -3'
miRNA:   3'- -UCG--CUGUCGaaGACCGau-GGCaUCGg -5'
9278 5' -54.8 NC_002512.2 + 4420 0.67 0.945624
Target:  5'- cGaCGGCGGCUgCUGGUagACCGgcgggguGCCg -3'
miRNA:   3'- uC-GCUGUCGAaGACCGa-UGGCau-----CGG- -5'
9278 5' -54.8 NC_002512.2 + 6410 0.67 0.945624
Target:  5'- aGGCGGCGGCggcgCUGGggaaggcgGCCGUcuGGCg -3'
miRNA:   3'- -UCGCUGUCGaa--GACCga------UGGCA--UCGg -5'
9278 5' -54.8 NC_002512.2 + 104929 0.67 0.945624
Target:  5'- cGCGACGGCcuccucgUCcGGCgucgGCgCGgcGCCg -3'
miRNA:   3'- uCGCUGUCGa------AGaCCGa---UG-GCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 213439 0.67 0.941162
Target:  5'- aGGCGgcccACAGCaUCauauacucucacUGGCUGCCGccuGCCu -3'
miRNA:   3'- -UCGC----UGUCGaAG------------ACCGAUGGCau-CGG- -5'
9278 5' -54.8 NC_002512.2 + 38913 0.67 0.941162
Target:  5'- cGGCGACGGCccggaggGGCcGCCGcGGCg -3'
miRNA:   3'- -UCGCUGUCGaaga---CCGaUGGCaUCGg -5'
9278 5' -54.8 NC_002512.2 + 123151 0.67 0.941162
Target:  5'- gGGCGGCGGCgccgCgaucGCcGCCGaGGCCg -3'
miRNA:   3'- -UCGCUGUCGaa--Gac--CGaUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 124883 0.68 0.936469
Target:  5'- gGGCGGCGGCcccgUCacGGCgACCGUucGGCg -3'
miRNA:   3'- -UCGCUGUCGa---AGa-CCGaUGGCA--UCGg -5'
9278 5' -54.8 NC_002512.2 + 90904 0.68 0.936469
Target:  5'- cGgGACGGCcggaCUGGCgGCCGcgaacggGGCCg -3'
miRNA:   3'- uCgCUGUCGaa--GACCGaUGGCa------UCGG- -5'
9278 5' -54.8 NC_002512.2 + 7053 0.68 0.936469
Target:  5'- aAGCGGCAGUUccgUCggaagucGCaGCCGUGGCUc -3'
miRNA:   3'- -UCGCUGUCGA---AGac-----CGaUGGCAUCGG- -5'
9278 5' -54.8 NC_002512.2 + 23306 0.68 0.936469
Target:  5'- cGCGuACGGCaccugcaagUUCUGGCgccCCG-GGCCg -3'
miRNA:   3'- uCGC-UGUCG---------AAGACCGau-GGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 126744 0.68 0.936469
Target:  5'- cGCGAguGCcugcUCUGGCUGCUcuucuGcGGCCc -3'
miRNA:   3'- uCGCUguCGa---AGACCGAUGG-----CaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 54264 0.68 0.936469
Target:  5'- gGGCGGCGGCgUC-GGCgACCcUGGCa -3'
miRNA:   3'- -UCGCUGUCGaAGaCCGaUGGcAUCGg -5'
9278 5' -54.8 NC_002512.2 + 75284 0.68 0.931545
Target:  5'- cGGCGGCGGCggC-GGCgacgaugccGCCGUcGCCc -3'
miRNA:   3'- -UCGCUGUCGaaGaCCGa--------UGGCAuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.