Results 21 - 40 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 152476 | 0.71 | 0.911891 |
Target: 5'- gGGCGGGuGUCGAGGuuagGCgCCAUUuuguguuucgcgcugGGCa -3' miRNA: 3'- -CCGCCU-CAGUUCCua--UGgGGUAA---------------CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 226852 | 0.71 | 0.890591 |
Target: 5'- aGGCGGAGcaggccgcCAGGGAgGCCCgGgaGGCc -3' miRNA: 3'- -CCGCCUCa-------GUUCCUaUGGGgUaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 126999 | 0.71 | 0.909522 |
Target: 5'- aGCGcGGGUCGuacccGGGUcCCCCGUaGGCg -3' miRNA: 3'- cCGC-CUCAGUu----CCUAuGGGGUAaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 185857 | 0.71 | 0.903438 |
Target: 5'- aGCGGuacGUCGAGGAgggcGCCUCGggccgcUGGCa -3' miRNA: 3'- cCGCCu--CAGUUCCUa---UGGGGUa-----ACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 108427 | 0.7 | 0.936469 |
Target: 5'- cGGCGGcGGgcgCGGGGcggACCCCucagGGCu -3' miRNA: 3'- -CCGCC-UCa--GUUCCua-UGGGGuaa-CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 100365 | 0.7 | 0.920446 |
Target: 5'- cGGCGuaggccagcugccGAGUCAgcAGGAgcgaGCUCCAgUUGGCg -3' miRNA: 3'- -CCGC-------------CUCAGU--UCCUa---UGGGGU-AACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 80824 | 0.7 | 0.936469 |
Target: 5'- -uCGGcGUCGGcGGAgggGCCCCGUaGGCg -3' miRNA: 3'- ccGCCuCAGUU-CCUa--UGGGGUAaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 116895 | 0.7 | 0.926388 |
Target: 5'- cGGCGGGGcCGGGGcggGCUCCucggacGGCg -3' miRNA: 3'- -CCGCCUCaGUUCCua-UGGGGuaa---CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 223043 | 0.7 | 0.926388 |
Target: 5'- cGGCGaGGUCcGGGAggUGCCCC--UGGUc -3' miRNA: 3'- -CCGCcUCAGuUCCU--AUGGGGuaACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 9754 | 0.7 | 0.920998 |
Target: 5'- cGGCGGAGcC--GGAcccgccGCCCCGcgUGGCg -3' miRNA: 3'- -CCGCCUCaGuuCCUa-----UGGGGUa-ACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 127925 | 0.69 | 0.941162 |
Target: 5'- gGGCGGA-UCGguAGGGUACCCgA--GGCc -3' miRNA: 3'- -CCGCCUcAGU--UCCUAUGGGgUaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 4585 | 0.69 | 0.941162 |
Target: 5'- cGGCGGAG--GAGGcgGCgCCGcgGGCc -3' miRNA: 3'- -CCGCCUCagUUCCuaUGgGGUaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 211554 | 0.69 | 0.949858 |
Target: 5'- cGGCGuGuGcCGcGGGAUGuCCCCAUgcggGGCg -3' miRNA: 3'- -CCGC-CuCaGU-UCCUAU-GGGGUAa---CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 125160 | 0.69 | 0.941162 |
Target: 5'- cGCGGAGagcuUCGAGGAcuucguggccgGCCCCuuccaggUGGCc -3' miRNA: 3'- cCGCCUC----AGUUCCUa----------UGGGGua-----ACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 221082 | 0.69 | 0.945624 |
Target: 5'- cGGCGGAacggcGUgGGGGAcGCCCUcc-GGCg -3' miRNA: 3'- -CCGCCU-----CAgUUCCUaUGGGGuaaCCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 158995 | 0.69 | 0.948191 |
Target: 5'- gGGCGGAGgc--GGcgGCCCCGgcguccgcgccgGGCg -3' miRNA: 3'- -CCGCCUCaguuCCuaUGGGGUaa----------CCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 213350 | 0.69 | 0.945624 |
Target: 5'- -cCGGAGcCAGGGGgacGCCCgCGcUGGCg -3' miRNA: 3'- ccGCCUCaGUUCCUa--UGGG-GUaACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 200101 | 0.69 | 0.953866 |
Target: 5'- cGCGGGGUCGccGGGGUACUUCA---GCa -3' miRNA: 3'- cCGCCUCAGU--UCCUAUGGGGUaacCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 138674 | 0.69 | 0.945624 |
Target: 5'- cGGUGGAcUCGcuGAacgUGCCCCGggUGGCg -3' miRNA: 3'- -CCGCCUcAGUucCU---AUGGGGUa-ACCG- -5' |
|||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 157037 | 0.69 | 0.957653 |
Target: 5'- cGGCccGGAG-CGAGGA--CCCCGgcaaGGCg -3' miRNA: 3'- -CCG--CCUCaGUUCCUauGGGGUaa--CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home