miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 5' -55.2 NC_002512.2 + 85775 1.13 0.003764
Target:  5'- aGAUAGACCGCGACUCGGAGGUCGUCCg -3'
miRNA:   3'- -CUAUCUGGCGCUGAGCCUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 221442 0.83 0.253011
Target:  5'- --cGGACCGCGGC-CGGGgcgcGGUCGUCCg -3'
miRNA:   3'- cuaUCUGGCGCUGaGCCU----CCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 107212 0.77 0.515495
Target:  5'- --cGGGCCGCGGC-CGGGGagccgcggucaccGUCGUCCg -3'
miRNA:   3'- cuaUCUGGCGCUGaGCCUC-------------CAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 45321 0.77 0.516438
Target:  5'- --cGGcCCGCGGgUCGGAGGgcCGUCCg -3'
miRNA:   3'- cuaUCuGGCGCUgAGCCUCCa-GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 102151 0.77 0.535431
Target:  5'- ---cGGCCGCGACcgCGGcuGGGUCGUCg -3'
miRNA:   3'- cuauCUGGCGCUGa-GCC--UCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 2104 0.77 0.535431
Target:  5'- cGGUAcGGCCGCGGCUCGGucgcGGG-CGUCg -3'
miRNA:   3'- -CUAU-CUGGCGCUGAGCC----UCCaGCAGg -5'
9291 5' -55.2 NC_002512.2 + 222188 0.76 0.54502
Target:  5'- --cGGGCCGCGGC-CGGc-GUCGUCCg -3'
miRNA:   3'- cuaUCUGGCGCUGaGCCucCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 227497 0.76 0.593678
Target:  5'- aGGUAGgagacGCCGCGACcCGGGGGggagaGUCCg -3'
miRNA:   3'- -CUAUC-----UGGCGCUGaGCCUCCag---CAGG- -5'
9291 5' -55.2 NC_002512.2 + 123025 0.76 0.593678
Target:  5'- ---cGugCGCGACgaGGAGGUCGUCg -3'
miRNA:   3'- cuauCugGCGCUGagCCUCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 139244 0.75 0.633106
Target:  5'- --gAGACCGCGGCcgCGGcgccGGGUCGcgCCg -3'
miRNA:   3'- cuaUCUGGCGCUGa-GCC----UCCAGCa-GG- -5'
9291 5' -55.2 NC_002512.2 + 166487 0.75 0.642979
Target:  5'- --gGGACCGCGGgUCGGAGGaagaagaagCgGUCCg -3'
miRNA:   3'- cuaUCUGGCGCUgAGCCUCCa--------G-CAGG- -5'
9291 5' -55.2 NC_002512.2 + 154318 0.74 0.67252
Target:  5'- --cGGACCGgGAUcCGGA-GUCGUCCg -3'
miRNA:   3'- cuaUCUGGCgCUGaGCCUcCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 150954 0.74 0.682316
Target:  5'- ---cGGCCGCgGACUCGGAGGcgggcucgCGUCg -3'
miRNA:   3'- cuauCUGGCG-CUGAGCCUCCa-------GCAGg -5'
9291 5' -55.2 NC_002512.2 + 7323 0.74 0.701784
Target:  5'- --cGGGCCGCGGCgggaCGGucGGGUCG-CCg -3'
miRNA:   3'- cuaUCUGGCGCUGa---GCC--UCCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 11153 0.74 0.701784
Target:  5'- --cGGACaCGCG-CUCGacGGGUCGUCCg -3'
miRNA:   3'- cuaUCUG-GCGCuGAGCc-UCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 221958 0.73 0.71144
Target:  5'- ---cGGCCGCaACgaaacCGGAGGUCGUUCg -3'
miRNA:   3'- cuauCUGGCGcUGa----GCCUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 130588 0.73 0.721033
Target:  5'- --gAGGCCGCGGcCUCGGAGG-CGg-- -3'
miRNA:   3'- cuaUCUGGCGCU-GAGCCUCCaGCagg -5'
9291 5' -55.2 NC_002512.2 + 217589 0.73 0.721033
Target:  5'- ---cGGCgGCGccgcCUCGGGGGUCGUCg -3'
miRNA:   3'- cuauCUGgCGCu---GAGCCUCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 218469 0.73 0.729607
Target:  5'- --cGGACCGCGGucaucucCUCGucccgcGGGUCGUCCg -3'
miRNA:   3'- cuaUCUGGCGCU-------GAGCc-----UCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 195049 0.73 0.739999
Target:  5'- ----cGCCGCGGCccgCGGgcgggaGGGUCGUCCg -3'
miRNA:   3'- cuaucUGGCGCUGa--GCC------UCCAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.