miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 5' -55.2 NC_002512.2 + 85775 1.13 0.003764
Target:  5'- aGAUAGACCGCGACUCGGAGGUCGUCCg -3'
miRNA:   3'- -CUAUCUGGCGCUGAGCCUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 36377 0.71 0.844168
Target:  5'- aGUGcACCGUGACguuggCGcgaccGAGGUCGUCCa -3'
miRNA:   3'- cUAUcUGGCGCUGa----GC-----CUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 152455 0.7 0.859352
Target:  5'- --cGGGCgCGCGGCguugGGAGG-CGUCCc -3'
miRNA:   3'- cuaUCUG-GCGCUGag--CCUCCaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 106017 0.66 0.980582
Target:  5'- --cGGGCgGCGccGC-CGGGGGUgcggCGUCCu -3'
miRNA:   3'- cuaUCUGgCGC--UGaGCCUCCA----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 123025 0.76 0.593678
Target:  5'- ---cGugCGCGACgaGGAGGUCGUCg -3'
miRNA:   3'- cuauCugGCGCUGagCCUCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 139244 0.75 0.633106
Target:  5'- --gAGACCGCGGCcgCGGcgccGGGUCGcgCCg -3'
miRNA:   3'- cuaUCUGGCGCUGa-GCC----UCCAGCa-GG- -5'
9291 5' -55.2 NC_002512.2 + 7323 0.74 0.701784
Target:  5'- --cGGGCCGCGGCgggaCGGucGGGUCG-CCg -3'
miRNA:   3'- cuaUCUGGCGCUGa---GCC--UCCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 11153 0.74 0.701784
Target:  5'- --cGGACaCGCG-CUCGacGGGUCGUCCg -3'
miRNA:   3'- cuaUCUG-GCGCuGAGCc-UCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 81890 0.72 0.776813
Target:  5'- --gAGGCCGUGguguACUcgCGGAGGUCGUgCg -3'
miRNA:   3'- cuaUCUGGCGC----UGA--GCCUCCAGCAgG- -5'
9291 5' -55.2 NC_002512.2 + 5032 0.71 0.844168
Target:  5'- --cAGGCCGUGGCcauggccgUGGAGGUauacgCGUCCa -3'
miRNA:   3'- cuaUCUGGCGCUGa-------GCCUCCA-----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 139024 0.71 0.811702
Target:  5'- ---cGACgGCGGCgCGGAcGGcUCGUCCa -3'
miRNA:   3'- cuauCUGgCGCUGaGCCU-CC-AGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 77831 0.72 0.76777
Target:  5'- cGAU-GACCGCGACcgucuccguucUCGGAGGUCcgcgguGUCg -3'
miRNA:   3'- -CUAuCUGGCGCUG-----------AGCCUCCAG------CAGg -5'
9291 5' -55.2 NC_002512.2 + 45321 0.77 0.516438
Target:  5'- --cGGcCCGCGGgUCGGAGGgcCGUCCg -3'
miRNA:   3'- cuaUCuGGCGCUgAGCCUCCa-GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 103363 0.71 0.811702
Target:  5'- --gGGGCCGCGG-UCG--GGUCGUCCg -3'
miRNA:   3'- cuaUCUGGCGCUgAGCcuCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 2104 0.77 0.535431
Target:  5'- cGGUAcGGCCGCGGCUCGGucgcGGG-CGUCg -3'
miRNA:   3'- -CUAU-CUGGCGCUGAGCC----UCCaGCAGg -5'
9291 5' -55.2 NC_002512.2 + 221958 0.73 0.71144
Target:  5'- ---cGGCCGCaACgaaacCGGAGGUCGUUCg -3'
miRNA:   3'- cuauCUGGCGcUGa----GCCUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 130978 0.71 0.811702
Target:  5'- -cUGGuCCGaCGgaACUCGGAGcuGUCGUCCg -3'
miRNA:   3'- cuAUCuGGC-GC--UGAGCCUC--CAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 85233 0.71 0.851853
Target:  5'- --cGGACCGCGAacaGGuGGUCGuagaUCCg -3'
miRNA:   3'- cuaUCUGGCGCUgagCCuCCAGC----AGG- -5'
9291 5' -55.2 NC_002512.2 + 102151 0.77 0.535431
Target:  5'- ---cGGCCGCGACcgCGGcuGGGUCGUCg -3'
miRNA:   3'- cuauCUGGCGCUGa-GCC--UCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 154318 0.74 0.67252
Target:  5'- --cGGACCGgGAUcCGGA-GUCGUCCg -3'
miRNA:   3'- cuaUCUGGCgCUGaGCCUcCAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.