miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 5' -55.2 NC_002512.2 + 1962 0.68 0.94681
Target:  5'- ---cGuCCGcCGGCgUCGGAGGcggcgCGUCCg -3'
miRNA:   3'- cuauCuGGC-GCUG-AGCCUCCa----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 2104 0.77 0.535431
Target:  5'- cGGUAcGGCCGCGGCUCGGucgcGGG-CGUCg -3'
miRNA:   3'- -CUAU-CUGGCGCUGAGCC----UCCaGCAGg -5'
9291 5' -55.2 NC_002512.2 + 4433 0.68 0.933256
Target:  5'- uGGUAGACCgGCGgggugccggGCgCGGGGGUCGgcgUCg -3'
miRNA:   3'- -CUAUCUGG-CGC---------UGaGCCUCCAGCa--GG- -5'
9291 5' -55.2 NC_002512.2 + 5032 0.71 0.844168
Target:  5'- --cAGGCCGUGGCcauggccgUGGAGGUauacgCGUCCa -3'
miRNA:   3'- cuaUCUGGCGCUGa-------GCCUCCA-----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 7323 0.74 0.701784
Target:  5'- --cGGGCCGCGGCgggaCGGucGGGUCG-CCg -3'
miRNA:   3'- cuaUCUGGCGCUGa---GCC--UCCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 7442 0.69 0.917707
Target:  5'- aGGUuGGCCGCGGCcCGGGGGaaG-CCg -3'
miRNA:   3'- -CUAuCUGGCGCUGaGCCUCCagCaGG- -5'
9291 5' -55.2 NC_002512.2 + 11067 0.68 0.942512
Target:  5'- --aGGGCCGCGgaggGCgagaCGGAGcggacggcgguGUCGUCCg -3'
miRNA:   3'- cuaUCUGGCGC----UGa---GCCUC-----------CAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 11153 0.74 0.701784
Target:  5'- --cGGACaCGCG-CUCGacGGGUCGUCCg -3'
miRNA:   3'- cuaUCUG-GCGCuGAGCc-UCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 22571 0.67 0.968438
Target:  5'- cGGUGGugCuggugaaCGGCUCGGAGGccacggugcuggacaCGUCCg -3'
miRNA:   3'- -CUAUCugGc------GCUGAGCCUCCa--------------GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 24602 0.66 0.978445
Target:  5'- --gGGACCGCuGGgUCGGAaauaucucUCGUCCa -3'
miRNA:   3'- cuaUCUGGCG-CUgAGCCUcc------AGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 27337 0.67 0.95841
Target:  5'- --gAGAuCCGcCGACUgCGaGcccuGGGUCGUCCg -3'
miRNA:   3'- cuaUCU-GGC-GCUGA-GC-C----UCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 28231 0.66 0.973659
Target:  5'- --aGGaACCGCGGC-CGGGGccGUCGcgCCg -3'
miRNA:   3'- cuaUC-UGGCGCUGaGCCUC--CAGCa-GG- -5'
9291 5' -55.2 NC_002512.2 + 34959 0.67 0.964785
Target:  5'- gGAgcGGCCGCGAC-CGGGuccggcuGGgccucgCGUCCc -3'
miRNA:   3'- -CUauCUGGCGCUGaGCCU-------CCa-----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 35281 0.69 0.893884
Target:  5'- ---cGGCCGCGGCggCGGAGG-CGaUCa -3'
miRNA:   3'- cuauCUGGCGCUGa-GCCUCCaGC-AGg -5'
9291 5' -55.2 NC_002512.2 + 36377 0.71 0.844168
Target:  5'- aGUGcACCGUGACguuggCGcgaccGAGGUCGUCCa -3'
miRNA:   3'- cUAUcUGGCGCUGa----GC-----CUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 39884 0.67 0.961857
Target:  5'- ---cGACCGCGGCcaacuuGAGGUCGaCCu -3'
miRNA:   3'- cuauCUGGCGCUGagc---CUCCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 40366 0.67 0.968144
Target:  5'- ---cGACCGCGGCgagcccgggccCGGAGcGUC-UCCa -3'
miRNA:   3'- cuauCUGGCGCUGa----------GCCUC-CAGcAGG- -5'
9291 5' -55.2 NC_002512.2 + 43253 0.66 0.9759
Target:  5'- aGUGGcCCGCGGgcagcgagcugguCUCcuggaGGGGGUCGUCg -3'
miRNA:   3'- cUAUCuGGCGCU-------------GAG-----CCUCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 45321 0.77 0.516438
Target:  5'- --cGGcCCGCGGgUCGGAGGgcCGUCCg -3'
miRNA:   3'- cuaUCuGGCGCUgAGCCUCCa-GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 46098 0.68 0.937995
Target:  5'- --gGGucACCGCGACaaaggCGGAgGGUCGcCCc -3'
miRNA:   3'- cuaUC--UGGCGCUGa----GCCU-CCAGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.