Results 1 - 20 of 553 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9298 | 3' | -58 | NC_002512.2 | + | 148 | 0.78 | 0.348907 |
Target: 5'- gCCGgGCGgggCGCCGGcggaGGAGCGCgCGCCGg -3' miRNA: 3'- -GGCgUGCa--GCGGCU----UCUUGCG-GCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 1837 | 0.69 | 0.799015 |
Target: 5'- gCCGCAgcCGUcCGCgGgcGucuCGCCGCCGu -3' miRNA: 3'- -GGCGU--GCA-GCGgCuuCuu-GCGGCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 2198 | 0.73 | 0.602316 |
Target: 5'- gCCGC-CGUCGUCGucucGGucgccggcGGCGCCGCCGc -3' miRNA: 3'- -GGCGuGCAGCGGCu---UC--------UUGCGGCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 2253 | 0.7 | 0.763983 |
Target: 5'- gCGCucCGUCGCCu--GAccuCGCCGCCGc -3' miRNA: 3'- gGCGu-GCAGCGGcuuCUu--GCGGCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 2652 | 0.68 | 0.854838 |
Target: 5'- cCCGCcCGUcCGCCGcgccucccGGucCGCCGCCu -3' miRNA: 3'- -GGCGuGCA-GCGGCu-------UCuuGCGGCGGu -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 3161 | 0.72 | 0.649825 |
Target: 5'- cCCGCcguCGUCGcCCGcGGccucccgucgcucGACGCCGCCGc -3' miRNA: 3'- -GGCGu--GCAGC-GGCuUC-------------UUGCGGCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 3187 | 0.68 | 0.847358 |
Target: 5'- uUCGCgucgACGUCGUCGucGAACGUgucgguCGCCGu -3' miRNA: 3'- -GGCG----UGCAGCGGCuuCUUGCG------GCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 3307 | 0.74 | 0.516757 |
Target: 5'- gCCGCGCccuccUgGCCGggGAGCGCgaGCCGg -3' miRNA: 3'- -GGCGUGc----AgCGGCuuCUUGCGg-CGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 3923 | 0.66 | 0.913448 |
Target: 5'- aCCGguCGUCGUCGucGu-CGUCGUCGu -3' miRNA: 3'- -GGCguGCAGCGGCuuCuuGCGGCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 4328 | 0.71 | 0.689375 |
Target: 5'- uCgGCcuCGUCGCCGAAGAagucguccuccGCGCCucccGCCGu -3' miRNA: 3'- -GgCGu-GCAGCGGCUUCU-----------UGCGG----CGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 4834 | 0.88 | 0.080219 |
Target: 5'- uUGCGCGcCGCCGAGGAGCGCgGCCAu -3' miRNA: 3'- gGCGUGCaGCGGCUUCUUGCGgCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 4871 | 0.67 | 0.878206 |
Target: 5'- gCCGCguGCGgCGCCggcuggaggagcggcGAcgggaagAGGGCGCCGCCGc -3' miRNA: 3'- -GGCG--UGCaGCGG---------------CU-------UCUUGCGGCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 5331 | 0.66 | 0.907755 |
Target: 5'- aCG-ACGUCGCCGAAucccccGCGaCCGUCAu -3' miRNA: 3'- gGCgUGCAGCGGCUUcu----UGC-GGCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 5874 | 0.66 | 0.918928 |
Target: 5'- cCCGgGCGUCGuCCGAcu--CGUCGCUc -3' miRNA: 3'- -GGCgUGCAGC-GGCUucuuGCGGCGGu -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 6071 | 0.71 | 0.698932 |
Target: 5'- aCGCGcCGUCGUCGucccGGcgguCGCCGCCGa -3' miRNA: 3'- gGCGU-GCAGCGGCu---UCuu--GCGGCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 6180 | 0.72 | 0.641098 |
Target: 5'- cCCGUGCGagUCGCCGGccAGGACGauGCCGu -3' miRNA: 3'- -GGCGUGC--AGCGGCU--UCUUGCggCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 6306 | 0.68 | 0.862136 |
Target: 5'- gCUGUACa-CGUCG-AGGugGCCGCCGc -3' miRNA: 3'- -GGCGUGcaGCGGCuUCUugCGGCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 6412 | 0.67 | 0.876168 |
Target: 5'- gCgGCgGCGgCGCUGggGAAgGCgGCCGu -3' miRNA: 3'- -GgCG-UGCaGCGGCuuCUUgCGgCGGU- -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 7649 | 0.72 | 0.621693 |
Target: 5'- cCCGcCACGgCGaCGAAGGACGCgGCCc -3' miRNA: 3'- -GGC-GUGCaGCgGCUUCUUGCGgCGGu -5' |
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9298 | 3' | -58 | NC_002512.2 | + | 7909 | 0.72 | 0.650794 |
Target: 5'- aUCGUAUGUCGCCGGucGAACGaCCuCCGg -3' miRNA: 3'- -GGCGUGCAGCGGCUu-CUUGC-GGcGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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