miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9298 3' -58 NC_002512.2 + 109078 0.66 0.93408
Target:  5'- cCCGCGCGccaggucCGUCGAcaccGugGCCGUCAg -3'
miRNA:   3'- -GGCGUGCa------GCGGCUuc--UugCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 150807 0.66 0.929244
Target:  5'- cCCGuCACucacggGUCGCCGugacGAccGCGCCGCg- -3'
miRNA:   3'- -GGC-GUG------CAGCGGCuu--CU--UGCGGCGgu -5'
9298 3' -58 NC_002512.2 + 95952 0.66 0.929244
Target:  5'- aCGCGgGcCGUCGGGc--CGCCGCCGu -3'
miRNA:   3'- gGCGUgCaGCGGCUUcuuGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 220951 0.66 0.929244
Target:  5'- aCGCGCucuucaUCGCCGAcccGGccGAgGCCGCCc -3'
miRNA:   3'- gGCGUGc-----AGCGGCU---UC--UUgCGGCGGu -5'
9298 3' -58 NC_002512.2 + 208787 0.66 0.929244
Target:  5'- uCCGCgucugagacgGCgGUCGCCccGGAGCGggaCCGCCGc -3'
miRNA:   3'- -GGCG----------UG-CAGCGGcuUCUUGC---GGCGGU- -5'
9298 3' -58 NC_002512.2 + 198032 0.66 0.929244
Target:  5'- aCGCGCG-CGCgaGGGGACGCgGUCGu -3'
miRNA:   3'- gGCGUGCaGCGgcUUCUUGCGgCGGU- -5'
9298 3' -58 NC_002512.2 + 173295 0.66 0.929244
Target:  5'- uCCGCugGaggGCCGucaucGGcuccAACGCCGCCu -3'
miRNA:   3'- -GGCGugCag-CGGCu----UC----UUGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 128119 0.66 0.929244
Target:  5'- cCCGaGgGUuccCGCCGAcGGAGCGCCcggGCCAc -3'
miRNA:   3'- -GGCgUgCA---GCGGCU-UCUUGCGG---CGGU- -5'
9298 3' -58 NC_002512.2 + 126841 0.66 0.929244
Target:  5'- gCGCuCGUCGCgGucGu-CGCCGUCGu -3'
miRNA:   3'- gGCGuGCAGCGgCuuCuuGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 110516 0.66 0.93313
Target:  5'- gCCGcCGCGUCGUccaccaucccgcgggCGGAGAAgGCCcggagcaccucggcgGCCAu -3'
miRNA:   3'- -GGC-GUGCAGCG---------------GCUUCUUgCGG---------------CGGU- -5'
9298 3' -58 NC_002512.2 + 96614 0.66 0.933606
Target:  5'- -aGCGCGgagaCGCgggggagggCGAGGAaaccgcgaccgggGCGCCGCCGc -3'
miRNA:   3'- ggCGUGCa---GCG---------GCUUCU-------------UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 205570 0.66 0.93408
Target:  5'- -aGCcCGacCGCCGggGGACGCaguuCGCCc -3'
miRNA:   3'- ggCGuGCa-GCGGCuuCUUGCG----GCGGu -5'
9298 3' -58 NC_002512.2 + 155693 0.66 0.93408
Target:  5'- aCGgACGUCGCCGcccugugccGGCGCCuCCAc -3'
miRNA:   3'- gGCgUGCAGCGGCuuc------UUGCGGcGGU- -5'
9298 3' -58 NC_002512.2 + 152782 0.66 0.93408
Target:  5'- cCCGCG-GUUcCCGGucGGAaaGCGCUGCCGg -3'
miRNA:   3'- -GGCGUgCAGcGGCU--UCU--UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 95680 0.66 0.93408
Target:  5'- gCGCGCGUcCGCCGGgccuccggcgGGGACGggggGCCGg -3'
miRNA:   3'- gGCGUGCA-GCGGCU----------UCUUGCgg--CGGU- -5'
9298 3' -58 NC_002512.2 + 216209 0.66 0.93408
Target:  5'- gCCGCGgcCGUCGCCucguccGGGAGCuggaGCCGCg- -3'
miRNA:   3'- -GGCGU--GCAGCGGc-----UUCUUG----CGGCGgu -5'
9298 3' -58 NC_002512.2 + 215372 0.66 0.93408
Target:  5'- gUCGCGCGcuUCGCCGu----CGCCaGCCc -3'
miRNA:   3'- -GGCGUGC--AGCGGCuucuuGCGG-CGGu -5'
9298 3' -58 NC_002512.2 + 135124 0.66 0.93408
Target:  5'- aCgGCGCGaCGCucCGAGGGccGgGCCGCCc -3'
miRNA:   3'- -GgCGUGCaGCG--GCUUCU--UgCGGCGGu -5'
9298 3' -58 NC_002512.2 + 117876 0.66 0.93408
Target:  5'- gCCGCaagACGgaCGCCGggGGccCGUCGCUg -3'
miRNA:   3'- -GGCG---UGCa-GCGGCuuCUu-GCGGCGGu -5'
9298 3' -58 NC_002512.2 + 75757 0.66 0.93408
Target:  5'- -aGCGCG-CGUCGGAGAcCGCggaGCCc -3'
miRNA:   3'- ggCGUGCaGCGGCUUCUuGCGg--CGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.