miRNA display CGI


Results 1 - 20 of 553 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9298 3' -58 NC_002512.2 + 148 0.78 0.348907
Target:  5'- gCCGgGCGgggCGCCGGcggaGGAGCGCgCGCCGg -3'
miRNA:   3'- -GGCgUGCa--GCGGCU----UCUUGCG-GCGGU- -5'
9298 3' -58 NC_002512.2 + 1837 0.69 0.799015
Target:  5'- gCCGCAgcCGUcCGCgGgcGucuCGCCGCCGu -3'
miRNA:   3'- -GGCGU--GCA-GCGgCuuCuu-GCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 2198 0.73 0.602316
Target:  5'- gCCGC-CGUCGUCGucucGGucgccggcGGCGCCGCCGc -3'
miRNA:   3'- -GGCGuGCAGCGGCu---UC--------UUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 2253 0.7 0.763983
Target:  5'- gCGCucCGUCGCCu--GAccuCGCCGCCGc -3'
miRNA:   3'- gGCGu-GCAGCGGcuuCUu--GCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 2652 0.68 0.854838
Target:  5'- cCCGCcCGUcCGCCGcgccucccGGucCGCCGCCu -3'
miRNA:   3'- -GGCGuGCA-GCGGCu-------UCuuGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 3161 0.72 0.649825
Target:  5'- cCCGCcguCGUCGcCCGcGGccucccgucgcucGACGCCGCCGc -3'
miRNA:   3'- -GGCGu--GCAGC-GGCuUC-------------UUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 3187 0.68 0.847358
Target:  5'- uUCGCgucgACGUCGUCGucGAACGUgucgguCGCCGu -3'
miRNA:   3'- -GGCG----UGCAGCGGCuuCUUGCG------GCGGU- -5'
9298 3' -58 NC_002512.2 + 3307 0.74 0.516757
Target:  5'- gCCGCGCccuccUgGCCGggGAGCGCgaGCCGg -3'
miRNA:   3'- -GGCGUGc----AgCGGCuuCUUGCGg-CGGU- -5'
9298 3' -58 NC_002512.2 + 3923 0.66 0.913448
Target:  5'- aCCGguCGUCGUCGucGu-CGUCGUCGu -3'
miRNA:   3'- -GGCguGCAGCGGCuuCuuGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 4328 0.71 0.689375
Target:  5'- uCgGCcuCGUCGCCGAAGAagucguccuccGCGCCucccGCCGu -3'
miRNA:   3'- -GgCGu-GCAGCGGCUUCU-----------UGCGG----CGGU- -5'
9298 3' -58 NC_002512.2 + 4834 0.88 0.080219
Target:  5'- uUGCGCGcCGCCGAGGAGCGCgGCCAu -3'
miRNA:   3'- gGCGUGCaGCGGCUUCUUGCGgCGGU- -5'
9298 3' -58 NC_002512.2 + 4871 0.67 0.878206
Target:  5'- gCCGCguGCGgCGCCggcuggaggagcggcGAcgggaagAGGGCGCCGCCGc -3'
miRNA:   3'- -GGCG--UGCaGCGG---------------CU-------UCUUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 5331 0.66 0.907755
Target:  5'- aCG-ACGUCGCCGAAucccccGCGaCCGUCAu -3'
miRNA:   3'- gGCgUGCAGCGGCUUcu----UGC-GGCGGU- -5'
9298 3' -58 NC_002512.2 + 5874 0.66 0.918928
Target:  5'- cCCGgGCGUCGuCCGAcu--CGUCGCUc -3'
miRNA:   3'- -GGCgUGCAGC-GGCUucuuGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 6071 0.71 0.698932
Target:  5'- aCGCGcCGUCGUCGucccGGcgguCGCCGCCGa -3'
miRNA:   3'- gGCGU-GCAGCGGCu---UCuu--GCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 6180 0.72 0.641098
Target:  5'- cCCGUGCGagUCGCCGGccAGGACGauGCCGu -3'
miRNA:   3'- -GGCGUGC--AGCGGCU--UCUUGCggCGGU- -5'
9298 3' -58 NC_002512.2 + 6306 0.68 0.862136
Target:  5'- gCUGUACa-CGUCG-AGGugGCCGCCGc -3'
miRNA:   3'- -GGCGUGcaGCGGCuUCUugCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 6412 0.67 0.876168
Target:  5'- gCgGCgGCGgCGCUGggGAAgGCgGCCGu -3'
miRNA:   3'- -GgCG-UGCaGCGGCuuCUUgCGgCGGU- -5'
9298 3' -58 NC_002512.2 + 7649 0.72 0.621693
Target:  5'- cCCGcCACGgCGaCGAAGGACGCgGCCc -3'
miRNA:   3'- -GGC-GUGCaGCgGCUUCUUGCGgCGGu -5'
9298 3' -58 NC_002512.2 + 7909 0.72 0.650794
Target:  5'- aUCGUAUGUCGCCGGucGAACGaCCuCCGg -3'
miRNA:   3'- -GGCGUGCAGCGGCUu-CUUGC-GGcGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.