miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9298 3' -58 NC_002512.2 + 95703 1.1 0.00293
Target:  5'- cCCGCACGUCGCCGAAGAACGCCGCCAg -3'
miRNA:   3'- -GGCGUGCAGCGGCUUCUUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 154620 0.75 0.458964
Target:  5'- gCCGC-CGUCGCCGccaucguggggacGGGACGCgGCCGc -3'
miRNA:   3'- -GGCGuGCAGCGGCu------------UCUUGCGgCGGU- -5'
9298 3' -58 NC_002512.2 + 22247 0.75 0.480253
Target:  5'- gCCGCcggaACGgaaacaccaCGCCGAGGAAcuCGCCGCCGc -3'
miRNA:   3'- -GGCG----UGCa--------GCGGCUUCUU--GCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 109078 0.66 0.93408
Target:  5'- cCCGCGCGccaggucCGUCGAcaccGugGCCGUCAg -3'
miRNA:   3'- -GGCGUGCa------GCGGCUuc--UugCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 40803 0.81 0.228916
Target:  5'- aUCGgACGUCGCgGAgacucgccgucgAGAGCGCCGCCGg -3'
miRNA:   3'- -GGCgUGCAGCGgCU------------UCUUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 124398 0.79 0.3067
Target:  5'- -gGCugGUCGUCGAcgggcucgAGGACGUCGCCAu -3'
miRNA:   3'- ggCGugCAGCGGCU--------UCUUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 12281 0.78 0.334391
Target:  5'- gCCGCccgaGUCGCCGAcGAcccccgaggcgGCGCCGCCGg -3'
miRNA:   3'- -GGCGug--CAGCGGCUuCU-----------UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 25183 0.78 0.341593
Target:  5'- cCCGC-CGUCGCCGAcGucGCGuCCGCCGc -3'
miRNA:   3'- -GGCGuGCAGCGGCUuCu-UGC-GGCGGU- -5'
9298 3' -58 NC_002512.2 + 92160 0.77 0.387128
Target:  5'- aCGCuCGUCcCUGGAGAACGCCgGCCAu -3'
miRNA:   3'- gGCGuGCAGcGGCUUCUUGCGG-CGGU- -5'
9298 3' -58 NC_002512.2 + 139247 0.76 0.445054
Target:  5'- aCCGCggccGCGgCGCCGGGucGCGCCGCCc -3'
miRNA:   3'- -GGCG----UGCaGCGGCUUcuUGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 40193 0.76 0.419625
Target:  5'- cCCGgACGUCGaCGAcGAGgGCCGCCGg -3'
miRNA:   3'- -GGCgUGCAGCgGCUuCUUgCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 26731 0.77 0.371512
Target:  5'- gUGCGCGUCGCCG----GCGCCGCUg -3'
miRNA:   3'- gGCGUGCAGCGGCuucuUGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 135519 0.88 0.078215
Target:  5'- aCGCACGUC-CUGAGGAugGCCGCCAg -3'
miRNA:   3'- gGCGUGCAGcGGCUUCUugCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 20819 0.76 0.428003
Target:  5'- cCCGCacgaagACGUCGUCGGAGGA-GCCGUCGg -3'
miRNA:   3'- -GGCG------UGCAGCGGCUUCUUgCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 4834 0.88 0.080219
Target:  5'- uUGCGCGcCGCCGAGGAGCGCgGCCAu -3'
miRNA:   3'- gGCGUGCaGCGGCUUCUUGCGgCGGU- -5'
9298 3' -58 NC_002512.2 + 75554 0.78 0.348907
Target:  5'- uCCGCGgGcUCGCCGggGcGGgGCCGCCGc -3'
miRNA:   3'- -GGCGUgC-AGCGGCuuC-UUgCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 10447 0.76 0.436481
Target:  5'- -gGCACGggggCGCgGAGGAGgcCGCCGCCGc -3'
miRNA:   3'- ggCGUGCa---GCGgCUUCUU--GCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 34853 0.75 0.462478
Target:  5'- gCCGCGgcggcuucuuCGUCGCCGucGu-CGCCGCCGc -3'
miRNA:   3'- -GGCGU----------GCAGCGGCuuCuuGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 96982 0.83 0.172565
Target:  5'- cCCGCgagaguaucGCGUCGCCGggG-ACGCCGUCGu -3'
miRNA:   3'- -GGCG---------UGCAGCGGCuuCuUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 116761 0.78 0.325194
Target:  5'- gCGCGCGUCuCCGAGGAgaggcacgacgucaGCGUCGCCGc -3'
miRNA:   3'- gGCGUGCAGcGGCUUCU--------------UGCGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.