miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9298 3' -58 NC_002512.2 + 95703 1.1 0.00293
Target:  5'- cCCGCACGUCGCCGAAGAACGCCGCCAg -3'
miRNA:   3'- -GGCGUGCAGCGGCUUCUUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 135519 0.88 0.078215
Target:  5'- aCGCACGUC-CUGAGGAugGCCGCCAg -3'
miRNA:   3'- gGCGUGCAGcGGCUUCUugCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 4834 0.88 0.080219
Target:  5'- uUGCGCGcCGCCGAGGAGCGCgGCCAu -3'
miRNA:   3'- gGCGUGCaGCGGCUUCUUGCGgCGGU- -5'
9298 3' -58 NC_002512.2 + 77467 0.85 0.128926
Target:  5'- aCGCGCGUCGCCGggGAucccgcgcACGCuCGCCc -3'
miRNA:   3'- gGCGUGCAGCGGCuuCU--------UGCG-GCGGu -5'
9298 3' -58 NC_002512.2 + 223786 0.84 0.142203
Target:  5'- aCCGgACGUCGCCGggGAcgucggcgGCGaCCGCCGg -3'
miRNA:   3'- -GGCgUGCAGCGGCuuCU--------UGC-GGCGGU- -5'
9298 3' -58 NC_002512.2 + 185329 0.83 0.168474
Target:  5'- cCCGUcuGCGUCGCCGcccGGGugGCCGCCGc -3'
miRNA:   3'- -GGCG--UGCAGCGGCu--UCUugCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 186844 0.83 0.172152
Target:  5'- cCUGCGCGUCGCCGAGGAccuGCGCCucgaccuGCCc -3'
miRNA:   3'- -GGCGUGCAGCGGCUUCU---UGCGG-------CGGu -5'
9298 3' -58 NC_002512.2 + 96982 0.83 0.172565
Target:  5'- cCCGCgagaguaucGCGUCGCCGggG-ACGCCGUCGu -3'
miRNA:   3'- -GGCG---------UGCAGCGGCuuCuUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 135835 0.81 0.22368
Target:  5'- gCCGCGCccgucGUCGCCGAAGAGauCCGCCGc -3'
miRNA:   3'- -GGCGUG-----CAGCGGCUUCUUgcGGCGGU- -5'
9298 3' -58 NC_002512.2 + 40803 0.81 0.228916
Target:  5'- aUCGgACGUCGCgGAgacucgccgucgAGAGCGCCGCCGg -3'
miRNA:   3'- -GGCgUGCAGCGgCU------------UCUUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 142798 0.8 0.245247
Target:  5'- cCCaGCACGUCGCCccgcgacccGAGGAACGCCGUa- -3'
miRNA:   3'- -GG-CGUGCAGCGG---------CUUCUUGCGGCGgu -5'
9298 3' -58 NC_002512.2 + 124398 0.79 0.3067
Target:  5'- -gGCugGUCGUCGAcgggcucgAGGACGUCGCCAu -3'
miRNA:   3'- ggCGugCAGCGGCU--------UCUUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 107994 0.78 0.314136
Target:  5'- cCCGCGCGUCGCCGAGcgucccccgcGAccucccccucggaucCGCCGCCGu -3'
miRNA:   3'- -GGCGUGCAGCGGCUU----------CUu--------------GCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 116761 0.78 0.325194
Target:  5'- gCGCGCGUCuCCGAGGAgaggcacgacgucaGCGUCGCCGc -3'
miRNA:   3'- gGCGUGCAGcGGCUUCU--------------UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 12281 0.78 0.334391
Target:  5'- gCCGCccgaGUCGCCGAcGAcccccgaggcgGCGCCGCCGg -3'
miRNA:   3'- -GGCGug--CAGCGGCUuCU-----------UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 25183 0.78 0.341593
Target:  5'- cCCGC-CGUCGCCGAcGucGCGuCCGCCGc -3'
miRNA:   3'- -GGCGuGCAGCGGCUuCu-UGC-GGCGGU- -5'
9298 3' -58 NC_002512.2 + 75554 0.78 0.348907
Target:  5'- uCCGCGgGcUCGCCGggGcGGgGCCGCCGc -3'
miRNA:   3'- -GGCGUgC-AGCGGCuuC-UUgCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 148 0.78 0.348907
Target:  5'- gCCGgGCGgggCGCCGGcggaGGAGCGCgCGCCGg -3'
miRNA:   3'- -GGCgUGCa--GCGGCU----UCUUGCG-GCGGU- -5'
9298 3' -58 NC_002512.2 + 229551 0.78 0.348907
Target:  5'- gCCGgGCGgggCGCCGGcggaGGAGCGCgCGCCGg -3'
miRNA:   3'- -GGCgUGCa--GCGGCU----UCUUGCG-GCGGU- -5'
9298 3' -58 NC_002512.2 + 102453 0.77 0.363868
Target:  5'- cCCGCaugGCGUCGCgGAGGAGgGCgCGCCc -3'
miRNA:   3'- -GGCG---UGCAGCGgCUUCUUgCG-GCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.