miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9320 3' -57.6 NC_002512.2 + 158866 0.66 0.914781
Target:  5'- gUCGUcGACCGGC-CGG-CGGCGGCc- -3'
miRNA:   3'- -AGCGcCUGGUCGaGCUaGUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 129924 0.66 0.914781
Target:  5'- cCGCGGgGCCAgGC-CGAUCaggcaccggcGGCAGCa- -3'
miRNA:   3'- aGCGCC-UGGU-CGaGCUAG----------UCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 177825 0.66 0.914781
Target:  5'- gUCGcCGGGUCAGCugcgauaccgugUCGAUggaggcCAGCAGCUCn -3'
miRNA:   3'- -AGC-GCCUGGUCG------------AGCUA------GUCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 174087 0.66 0.914781
Target:  5'- gCGCGGAUgGcGCUCGAU-AG-GGCUCg -3'
miRNA:   3'- aGCGCCUGgU-CGAGCUAgUCgUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 150517 0.66 0.914781
Target:  5'- gUCGgGGugCAGUUCcacgCGGCGGC-Cg -3'
miRNA:   3'- -AGCgCCugGUCGAGcua-GUCGUCGaG- -5'
9320 3' -57.6 NC_002512.2 + 185060 0.66 0.914781
Target:  5'- aCGCcGACCcgGGcCUCGAcCGGgAGCUCg -3'
miRNA:   3'- aGCGcCUGG--UC-GAGCUaGUCgUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 184655 0.66 0.909001
Target:  5'- cCGCGGGCgCcGCgccgaaaucCGGUCGGCGGC-Cg -3'
miRNA:   3'- aGCGCCUG-GuCGa--------GCUAGUCGUCGaG- -5'
9320 3' -57.6 NC_002512.2 + 196030 0.66 0.909001
Target:  5'- -gGgGGACCGGCUCGccaacaugacCGGCAuGUUCa -3'
miRNA:   3'- agCgCCUGGUCGAGCua--------GUCGU-CGAG- -5'
9320 3' -57.6 NC_002512.2 + 101089 0.66 0.902999
Target:  5'- cCGCGGACCAcGC-CGGagacccagagggUgAGCAGCg- -3'
miRNA:   3'- aGCGCCUGGU-CGaGCU------------AgUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 222420 0.66 0.902999
Target:  5'- gCGgGGGCCGGCagcCGcgCcGCGGCUUc -3'
miRNA:   3'- aGCgCCUGGUCGa--GCuaGuCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 209436 0.66 0.902386
Target:  5'- gCGCGGaugaccgucaucgGCCGGCU-GAUCuuCGGCUCc -3'
miRNA:   3'- aGCGCC-------------UGGUCGAgCUAGucGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 221685 0.66 0.897408
Target:  5'- aCGCGGACacccgcccggcgacGCUCGGccUCGGguGCUa -3'
miRNA:   3'- aGCGCCUGgu------------CGAGCU--AGUCguCGAg -5'
9320 3' -57.6 NC_002512.2 + 150699 0.66 0.896776
Target:  5'- cCGaCGGACCguuGGCUC--UCGGCGGC-Cg -3'
miRNA:   3'- aGC-GCCUGG---UCGAGcuAGUCGUCGaG- -5'
9320 3' -57.6 NC_002512.2 + 221562 0.66 0.896776
Target:  5'- cCGCGGucuCCGGCUCc--CGGCccuGCUCc -3'
miRNA:   3'- aGCGCCu--GGUCGAGcuaGUCGu--CGAG- -5'
9320 3' -57.6 NC_002512.2 + 90291 0.66 0.896776
Target:  5'- gCGCGGACCgGGCcCGAUUgAGCgcggAGCUg -3'
miRNA:   3'- aGCGCCUGG-UCGaGCUAG-UCG----UCGAg -5'
9320 3' -57.6 NC_002512.2 + 182571 0.66 0.892938
Target:  5'- cCGCGGuacaucuccuCCAGCagcuccgCGAUCgcccggcaguuccgcAGCGGCUCg -3'
miRNA:   3'- aGCGCCu---------GGUCGa------GCUAG---------------UCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 226320 0.66 0.890336
Target:  5'- cUGUGGGCCguGGCUCGGgaCGGCAGacggaUCu -3'
miRNA:   3'- aGCGCCUGG--UCGAGCUa-GUCGUCg----AG- -5'
9320 3' -57.6 NC_002512.2 + 90651 0.66 0.890336
Target:  5'- cCGCGGcCgCGGuCUCGGagUCGGCGGC-Cg -3'
miRNA:   3'- aGCGCCuG-GUC-GAGCU--AGUCGUCGaG- -5'
9320 3' -57.6 NC_002512.2 + 89400 0.66 0.890336
Target:  5'- aUGCGGGCCAgGUUCGcgCGGaaccaGGcCUCg -3'
miRNA:   3'- aGCGCCUGGU-CGAGCuaGUCg----UC-GAG- -5'
9320 3' -57.6 NC_002512.2 + 169003 0.67 0.886369
Target:  5'- gUCGCGcGCCGGCUCGGcgauccgggcgggcgUCcgcgAGCGGCg- -3'
miRNA:   3'- -AGCGCcUGGUCGAGCU---------------AG----UCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.