miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9320 5' -64.7 NC_002512.2 + 213194 0.66 0.6612
Target:  5'- cGGCuaccgccacaCCCUGGUCuGGGaCCgCCGGGUCGu -3'
miRNA:   3'- aCCGc---------GGGGCCAG-CUC-GG-GGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 149012 0.66 0.65934
Target:  5'- gGGcCGCCgCGGaccgcccgacacCGAGCCCCGcGUCc -3'
miRNA:   3'- aCC-GCGGgGCCa-----------GCUCGGGGCuCAGc -5'
9320 5' -64.7 NC_002512.2 + 181678 0.66 0.651892
Target:  5'- -cGCGCCCCgcGGcCGGGauCCCgCGGGUCa -3'
miRNA:   3'- acCGCGGGG--CCaGCUC--GGG-GCUCAGc -5'
9320 5' -64.7 NC_002512.2 + 74578 0.66 0.651892
Target:  5'- gGGCGCUCUGGUgCucgaggccgGGGCCCUccGUCGg -3'
miRNA:   3'- aCCGCGGGGCCA-G---------CUCGGGGcuCAGC- -5'
9320 5' -64.7 NC_002512.2 + 126380 0.66 0.64257
Target:  5'- cUGGcCGCCCgGGagagCGcccggGGCCCCGGG-CGc -3'
miRNA:   3'- -ACC-GCGGGgCCa---GC-----UCGGGGCUCaGC- -5'
9320 5' -64.7 NC_002512.2 + 108106 0.66 0.64257
Target:  5'- cGGCGUCCCcgccucggcGGUCcgcGGUCCCGAGagGc -3'
miRNA:   3'- aCCGCGGGG---------CCAGc--UCGGGGCUCagC- -5'
9320 5' -64.7 NC_002512.2 + 198563 0.66 0.64257
Target:  5'- gGGCGCUguCCaGGUCGuacauCCUCGAGUUGa -3'
miRNA:   3'- aCCGCGG--GG-CCAGCuc---GGGGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 225817 0.66 0.633241
Target:  5'- gGGUGgCCUGGgaccUCGAGCCgCGGGggaUCGa -3'
miRNA:   3'- aCCGCgGGGCC----AGCUCGGgGCUC---AGC- -5'
9320 5' -64.7 NC_002512.2 + 102237 0.66 0.633241
Target:  5'- cGGCGCucuguccgaCCCGGgccCGGGUCCgGGcGUCGu -3'
miRNA:   3'- aCCGCG---------GGGCCa--GCUCGGGgCU-CAGC- -5'
9320 5' -64.7 NC_002512.2 + 98129 0.66 0.622046
Target:  5'- cGGgGCgCUGGUCGucgcggccgcccGCCCCGgcGGUCGc -3'
miRNA:   3'- aCCgCGgGGCCAGCu-----------CGGGGC--UCAGC- -5'
9320 5' -64.7 NC_002512.2 + 199242 0.67 0.614588
Target:  5'- cGGCGCagCCCGauGUCGAGUCuCUGGauGUCGg -3'
miRNA:   3'- aCCGCG--GGGC--CAGCUCGG-GGCU--CAGC- -5'
9320 5' -64.7 NC_002512.2 + 199886 0.67 0.614588
Target:  5'- cGGCucGCCCUGGucUCGAGaccgCCCGuGUCu -3'
miRNA:   3'- aCCG--CGGGGCC--AGCUCg---GGGCuCAGc -5'
9320 5' -64.7 NC_002512.2 + 165400 0.67 0.608998
Target:  5'- gGGCGCUcaugguccaggagggCCGG-CGGGCCUaCGAGaUCGg -3'
miRNA:   3'- aCCGCGG---------------GGCCaGCUCGGG-GCUC-AGC- -5'
9320 5' -64.7 NC_002512.2 + 174222 0.67 0.605274
Target:  5'- -aGCGCCCCGccCG-GCgUCGAGUCGu -3'
miRNA:   3'- acCGCGGGGCcaGCuCGgGGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 138656 0.67 0.605274
Target:  5'- cGGCGUCCCugacgagcacGGUgGAcucgcugaacguGCCCCGGGUgGc -3'
miRNA:   3'- aCCGCGGGG----------CCAgCU------------CGGGGCUCAgC- -5'
9320 5' -64.7 NC_002512.2 + 117125 0.67 0.595978
Target:  5'- cGGgGCCCC-GUCGgcGGCgUUCGAGUCGc -3'
miRNA:   3'- aCCgCGGGGcCAGC--UCG-GGGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 198121 0.67 0.595978
Target:  5'- uUGGC-CCCCuugaGGUuggcgaagcgCGAGCCCCGcgcgggccgGGUCGg -3'
miRNA:   3'- -ACCGcGGGG----CCA----------GCUCGGGGC---------UCAGC- -5'
9320 5' -64.7 NC_002512.2 + 152820 0.67 0.577456
Target:  5'- cGGU-CCCCGGUCGAaaaggaucggGCCUCGcGGUCc -3'
miRNA:   3'- aCCGcGGGGCCAGCU----------CGGGGC-UCAGc -5'
9320 5' -64.7 NC_002512.2 + 128393 0.67 0.577456
Target:  5'- cGGCGgaCCCCGucUCGAGCCCgguggcgGGGUCGc -3'
miRNA:   3'- aCCGC--GGGGCc-AGCUCGGGg------CUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 143525 0.67 0.577456
Target:  5'- gGGCGCgCCUGG-CG-GCCUCGucgccGUCGg -3'
miRNA:   3'- aCCGCG-GGGCCaGCuCGGGGCu----CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.