miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 154704 0.66 0.796383
Target:  5'- gUCCGgCGUCGAgcggcgcgacGGaACGGCGUugCGUCc -3'
miRNA:   3'- gAGGCgGCAGCU----------CC-UGCCGCG--GCAGa -5'
9335 3' -62.1 NC_002512.2 + 227661 0.66 0.796383
Target:  5'- gUCCGgaGgaaGAGcGGCGGCGCCGcCg -3'
miRNA:   3'- gAGGCggCag-CUC-CUGCCGCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 3198 0.66 0.796383
Target:  5'- -gUCGUCGUCGAacGuGuCGGuCGCCGUCa -3'
miRNA:   3'- gaGGCGGCAGCU--C-CuGCC-GCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 209013 0.66 0.796383
Target:  5'- -cCCGUCGUCGccgccaugagcGGGGCGGC-CgCGUCc -3'
miRNA:   3'- gaGGCGGCAGC-----------UCCUGCCGcG-GCAGa -5'
9335 3' -62.1 NC_002512.2 + 227058 0.66 0.787986
Target:  5'- -cCCGCCGUCGuccGGGCccgcgcccGCGCCGg-- -3'
miRNA:   3'- gaGGCGGCAGCu--CCUGc-------CGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 176528 0.66 0.787986
Target:  5'- gCUUgGCCGUCacguaGGGGAgGGUggucuccgccGCCGUCa -3'
miRNA:   3'- -GAGgCGGCAG-----CUCCUgCCG----------CGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 125097 0.66 0.787986
Target:  5'- -cCCGCCGcgCGcGGACcccgccgacGCGCCGUCc -3'
miRNA:   3'- gaGGCGGCa-GCuCCUGc--------CGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 200487 0.66 0.787986
Target:  5'- ---aGUCGUgCGAGGGCGGCGUCcUCc -3'
miRNA:   3'- gaggCGGCA-GCUCCUGCCGCGGcAGa -5'
9335 3' -62.1 NC_002512.2 + 95143 0.66 0.787139
Target:  5'- gUCCGCCccggcggGUCGAGGAcCGGaGCCuUCc -3'
miRNA:   3'- gAGGCGG-------CAGCUCCU-GCCgCGGcAGa -5'
9335 3' -62.1 NC_002512.2 + 177572 0.66 0.779469
Target:  5'- ---gGCCGUCGccAGGAUGcGCGCCagcGUCUc -3'
miRNA:   3'- gaggCGGCAGC--UCCUGC-CGCGG---CAGA- -5'
9335 3' -62.1 NC_002512.2 + 95555 0.66 0.779469
Target:  5'- gCUCgGCCGcggCGAGuccguCGGCGCCGg-- -3'
miRNA:   3'- -GAGgCGGCa--GCUCcu---GCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 143191 0.66 0.779469
Target:  5'- --gCGCCcugcaCGAGGGUGGUGCCGUCc -3'
miRNA:   3'- gagGCGGca---GCUCCUGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 202145 0.66 0.779469
Target:  5'- -gCCGCCGcCGcGGGGCGG-GUgGUCg -3'
miRNA:   3'- gaGGCGGCaGC-UCCUGCCgCGgCAGa -5'
9335 3' -62.1 NC_002512.2 + 75734 0.66 0.779469
Target:  5'- gUCCGCCGaaCGGGaGGCGaccgaGCGCgCGUCg -3'
miRNA:   3'- gAGGCGGCa-GCUC-CUGC-----CGCG-GCAGa -5'
9335 3' -62.1 NC_002512.2 + 101412 0.66 0.779469
Target:  5'- gCUCCGCUucCGAGGgcacaGCGGCgGCCGg-- -3'
miRNA:   3'- -GAGGCGGcaGCUCC-----UGCCG-CGGCaga -5'
9335 3' -62.1 NC_002512.2 + 108162 0.66 0.779469
Target:  5'- cCUCCGgCGUCGc---CGGCGCCuUCUg -3'
miRNA:   3'- -GAGGCgGCAGCuccuGCCGCGGcAGA- -5'
9335 3' -62.1 NC_002512.2 + 179392 0.66 0.779469
Target:  5'- -aUCGCC-UCGGGGAUGcGCGCCaUCc -3'
miRNA:   3'- gaGGCGGcAGCUCCUGC-CGCGGcAGa -5'
9335 3' -62.1 NC_002512.2 + 171998 0.66 0.770839
Target:  5'- -aUCGCCGUCGccGuCGcCGCCGUCg -3'
miRNA:   3'- gaGGCGGCAGCucCuGCcGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 100073 0.66 0.770839
Target:  5'- -gCCGCgGgcCGGGGACGGaGCgGUCa -3'
miRNA:   3'- gaGGCGgCa-GCUCCUGCCgCGgCAGa -5'
9335 3' -62.1 NC_002512.2 + 226201 0.66 0.762103
Target:  5'- -aCCuCCGUCGGGGACGGgaggaccucCGgaCCGUCg -3'
miRNA:   3'- gaGGcGGCAGCUCCUGCC---------GC--GGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.