Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9335 | 5' | -56.9 | NC_002512.2 | + | 201056 | 0.66 | 0.923732 |
Target: 5'- gCAGGCGGaucgaccgGGCccacaugugcggGGUCUggGACAGCa -3' miRNA: 3'- aGUCCGCCg-------CCGa-----------CCAGAagCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 151040 | 0.79 | 0.282259 |
Target: 5'- -gAGGCGGCGGCccgucacgcGGUCcUCGACGGCg -3' miRNA: 3'- agUCCGCCGCCGa--------CCAGaAGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 103459 | 0.67 | 0.90195 |
Target: 5'- gCGGGUccgaggacGCGGCUcgGGUCU-CGGCGGCg -3' miRNA: 3'- aGUCCGc-------CGCCGA--CCAGAaGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 91887 | 0.67 | 0.90195 |
Target: 5'- gCGGGCGGCGGCg---CggCGcACGGCc -3' miRNA: 3'- aGUCCGCCGCCGaccaGaaGC-UGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 96201 | 0.67 | 0.90195 |
Target: 5'- -gAGGCGGCcGCgaGGUCggccaCGGCGGCc -3' miRNA: 3'- agUCCGCCGcCGa-CCAGaa---GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 179517 | 0.67 | 0.907995 |
Target: 5'- cUCAGuCGGCucuucggucgucGGCUcGGUCUUCGGCu-- -3' miRNA: 3'- -AGUCcGCCG------------CCGA-CCAGAAGCUGuug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 188658 | 0.67 | 0.907995 |
Target: 5'- --cGGCGGCGGCccGUCgucCGACcGCg -3' miRNA: 3'- aguCCGCCGCCGacCAGaa-GCUGuUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 95639 | 0.66 | 0.913817 |
Target: 5'- cCAGGgGGCGGCUcGGcCgccccCGGCAc- -3' miRNA: 3'- aGUCCgCCGCCGA-CCaGaa---GCUGUug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 149494 | 0.66 | 0.913817 |
Target: 5'- aUCGGG-GGCGGgUGGUCaaaaGGCcGCg -3' miRNA: 3'- -AGUCCgCCGCCgACCAGaag-CUGuUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 217849 | 0.66 | 0.913817 |
Target: 5'- -gAGGCGGCaGC-GGUCUgccCGGCGu- -3' miRNA: 3'- agUCCGCCGcCGaCCAGAa--GCUGUug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 153404 | 0.66 | 0.919416 |
Target: 5'- -gAGcGCGGCGGC-GGUCgaggUGGCGGa -3' miRNA: 3'- agUC-CGCCGCCGaCCAGaa--GCUGUUg -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 225586 | 0.66 | 0.939555 |
Target: 5'- -gAGG-GGCGcCgGGUCUUCGAcCAGCu -3' miRNA: 3'- agUCCgCCGCcGaCCAGAAGCU-GUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 158966 | 0.66 | 0.924789 |
Target: 5'- --cGGCGGCGaGC-GGU--UCGGCGGCc -3' miRNA: 3'- aguCCGCCGC-CGaCCAgaAGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 134173 | 0.66 | 0.929936 |
Target: 5'- cCGGacccUGGCGGCgu-UCUUCGGCGACg -3' miRNA: 3'- aGUCc---GCCGCCGaccAGAAGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 209304 | 0.66 | 0.929936 |
Target: 5'- -aAGGagaaCGGCGGCgucagGGUCgaccUgGACGACg -3' miRNA: 3'- agUCC----GCCGCCGa----CCAGa---AgCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 201713 | 0.66 | 0.931932 |
Target: 5'- --cGGCGGCGGCgucGUCgucgcggggggaGACGACg -3' miRNA: 3'- aguCCGCCGCCGac-CAGaag---------CUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 185385 | 0.66 | 0.934376 |
Target: 5'- --cGGCGGCGGCUGcgaggccGUCUUCuccgccCGGCc -3' miRNA: 3'- aguCCGCCGCCGAC-------CAGAAGcu----GUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 169617 | 0.66 | 0.934858 |
Target: 5'- uUCAGGuCGGcCGGCaGGUCcaggugUCGggucuGCGGCa -3' miRNA: 3'- -AGUCC-GCC-GCCGaCCAGa-----AGC-----UGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 159000 | 0.66 | 0.935338 |
Target: 5'- -gAGGCGGCGGCcccgGcGUCcgcgccgggcggacCGACGACu -3' miRNA: 3'- agUCCGCCGCCGa---C-CAGaa------------GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 184901 | 0.66 | 0.937703 |
Target: 5'- gCGGGCGGCGGCgcuacugcccCUUCGcCGAg -3' miRNA: 3'- aGUCCGCCGCCGacca------GAAGCuGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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