miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9337 3' -48.9 NC_002512.2 + 162027 0.66 0.999885
Target:  5'- --cCGACGGCGaggugGUGCccgauucuaUGCGcguGCAUCCu -3'
miRNA:   3'- cuuGCUGUCGCa----CAUG---------ACGU---UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 137254 0.66 0.999885
Target:  5'- --cCGGCGGCGaGcGCUGCGGgAUCg -3'
miRNA:   3'- cuuGCUGUCGCaCaUGACGUUgUAGg -5'
9337 3' -48.9 NC_002512.2 + 90939 0.66 0.999885
Target:  5'- -cGCGACcggGGCGUGcguggGC-GCGACgAUCCa -3'
miRNA:   3'- cuUGCUG---UCGCACa----UGaCGUUG-UAGG- -5'
9337 3' -48.9 NC_002512.2 + 26549 0.66 0.999885
Target:  5'- uGAACGugAGUGU--ACUGUAGCGa-- -3'
miRNA:   3'- -CUUGCugUCGCAcaUGACGUUGUagg -5'
9337 3' -48.9 NC_002512.2 + 97696 0.66 0.999885
Target:  5'- --cUGACGGUGcUGcUGCUGCuguGCAUCg -3'
miRNA:   3'- cuuGCUGUCGC-AC-AUGACGu--UGUAGg -5'
9337 3' -48.9 NC_002512.2 + 128821 0.66 0.999882
Target:  5'- cGGCGGCGGCGcUGUcggcgcaGCUGCAccgcucggGCG-CCg -3'
miRNA:   3'- cUUGCUGUCGC-ACA-------UGACGU--------UGUaGG- -5'
9337 3' -48.9 NC_002512.2 + 131241 0.66 0.999851
Target:  5'- ---aGGCcGCgGUGgcCUGCAGCAUCa -3'
miRNA:   3'- cuugCUGuCG-CACauGACGUUGUAGg -5'
9337 3' -48.9 NC_002512.2 + 129533 0.66 0.99981
Target:  5'- aGGACGAC-GCc-GUGCUGCGugG-CCg -3'
miRNA:   3'- -CUUGCUGuCGcaCAUGACGUugUaGG- -5'
9337 3' -48.9 NC_002512.2 + 175281 0.66 0.99981
Target:  5'- uGGCGGCcGCGUacacGUACucggggUGCAGCGUCg -3'
miRNA:   3'- cUUGCUGuCGCA----CAUG------ACGUUGUAGg -5'
9337 3' -48.9 NC_002512.2 + 152862 0.66 0.999758
Target:  5'- gGAACGuGCAGCcgGUGUGCgGgAGCgGUCCc -3'
miRNA:   3'- -CUUGC-UGUCG--CACAUGaCgUUG-UAGG- -5'
9337 3' -48.9 NC_002512.2 + 205530 0.66 0.999758
Target:  5'- cGAGCGcauACAGCGgcaGCUGCAgggcuugaACAUCa -3'
miRNA:   3'- -CUUGC---UGUCGCacaUGACGU--------UGUAGg -5'
9337 3' -48.9 NC_002512.2 + 117135 0.66 0.999758
Target:  5'- --uCGGCGGCGUucgaGUcGCUGCAGCAc-- -3'
miRNA:   3'- cuuGCUGUCGCA----CA-UGACGUUGUagg -5'
9337 3' -48.9 NC_002512.2 + 207394 0.66 0.999758
Target:  5'- uGAugGACGGC---UGCUGCGcgcucAUGUCCa -3'
miRNA:   3'- -CUugCUGUCGcacAUGACGU-----UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 127266 0.66 0.999694
Target:  5'- cGGCGACGGCGUucccccggGCguugGCGGCggCCg -3'
miRNA:   3'- cUUGCUGUCGCAca------UGa---CGUUGuaGG- -5'
9337 3' -48.9 NC_002512.2 + 201688 0.66 0.999694
Target:  5'- aGGGCGGCcGCGUcugGUGCgggaucggcgGCGGCGUCg -3'
miRNA:   3'- -CUUGCUGuCGCA---CAUGa---------CGUUGUAGg -5'
9337 3' -48.9 NC_002512.2 + 200906 0.67 0.999616
Target:  5'- uGAACGccgaGGcCGUGUACUGCuuCA-CCu -3'
miRNA:   3'- -CUUGCug--UC-GCACAUGACGuuGUaGG- -5'
9337 3' -48.9 NC_002512.2 + 169078 0.67 0.999616
Target:  5'- cGGCGGCGGCGUc-GCgGCccGCGUCCu -3'
miRNA:   3'- cUUGCUGUCGCAcaUGaCGu-UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 172216 0.67 0.999616
Target:  5'- uGGugGACgAGC-UGUACUGUcGCuUCCu -3'
miRNA:   3'- -CUugCUG-UCGcACAUGACGuUGuAGG- -5'
9337 3' -48.9 NC_002512.2 + 146116 0.67 0.999616
Target:  5'- cGGCGGCGGCGccGUcuuCUGCAccuGCcgCCg -3'
miRNA:   3'- cUUGCUGUCGCa-CAu--GACGU---UGuaGG- -5'
9337 3' -48.9 NC_002512.2 + 115567 0.67 0.999616
Target:  5'- cGAGCGG-AGCGUGgcGCUGgAGCA-CCu -3'
miRNA:   3'- -CUUGCUgUCGCACa-UGACgUUGUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.