miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9349 3' -63.3 NC_002512.2 + 117098 0.66 0.729636
Target:  5'- gGC-CGCCCUGGacccggcacaGCGgcacggggcCCCGUCGGCGg -3'
miRNA:   3'- -CGuGCGGGGCCag--------CGC---------GGGCAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 214424 0.66 0.720518
Target:  5'- cCGCGCCCgaGGacCGCGUCCccgucuacGUCGGCGa -3'
miRNA:   3'- cGUGCGGGg-CCa-GCGCGGG--------CAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 99900 0.66 0.720518
Target:  5'- cGCgGCGCCgCCGG-CGCuCCCGgCGGUg -3'
miRNA:   3'- -CG-UGCGG-GGCCaGCGcGGGCaGUCGu -5'
9349 3' -63.3 NC_002512.2 + 143730 0.66 0.720518
Target:  5'- aGCAgGgCCUCGGagGCGgCCG-CGGCGu -3'
miRNA:   3'- -CGUgC-GGGGCCagCGCgGGCaGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 172778 0.66 0.719603
Target:  5'- cGCACcCCCCGcuuccucGUCcCGCUCGgUCAGCGg -3'
miRNA:   3'- -CGUGcGGGGC-------CAGcGCGGGC-AGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 128778 0.66 0.711336
Target:  5'- cGCACGCCgCGccgCGCGCUgGccggggucuUCAGCGa -3'
miRNA:   3'- -CGUGCGGgGCca-GCGCGGgC---------AGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 190067 0.66 0.711336
Target:  5'- cCACGagCUGGcCGCgGCCgGUCAGCGg -3'
miRNA:   3'- cGUGCggGGCCaGCG-CGGgCAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 132474 0.66 0.711336
Target:  5'- cGCGCGucucuCCCCGGccuccgcgucgUCGCGCCCGcccccgucucCGGCc -3'
miRNA:   3'- -CGUGC-----GGGGCC-----------AGCGCGGGCa---------GUCGu -5'
9349 3' -63.3 NC_002512.2 + 141714 0.66 0.702096
Target:  5'- --uCGUCCCGGaCGCGaCCGUCccgGGCGa -3'
miRNA:   3'- cguGCGGGGCCaGCGCgGGCAG---UCGU- -5'
9349 3' -63.3 NC_002512.2 + 183412 0.66 0.702096
Target:  5'- -gAUGCCCaagagCGUGCUCGUCAGCc -3'
miRNA:   3'- cgUGCGGGgcca-GCGCGGGCAGUCGu -5'
9349 3' -63.3 NC_002512.2 + 218887 0.66 0.702096
Target:  5'- uGCGCGCCCUcaucgCGCGCCaCGcggggCGGCu -3'
miRNA:   3'- -CGUGCGGGGcca--GCGCGG-GCa----GUCGu -5'
9349 3' -63.3 NC_002512.2 + 168989 0.66 0.702096
Target:  5'- cGCuCGaCCgagCGGUCGCGCgCCGgcUCGGCGa -3'
miRNA:   3'- -CGuGC-GGg--GCCAGCGCG-GGC--AGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 201826 0.66 0.692806
Target:  5'- cCGCGCCCgGGggcuccuucCGCGgCCGgCAGCu -3'
miRNA:   3'- cGUGCGGGgCCa--------GCGCgGGCaGUCGu -5'
9349 3' -63.3 NC_002512.2 + 126382 0.66 0.692806
Target:  5'- gGC-CGCCCgGGagaGCGCCCGg-GGCc -3'
miRNA:   3'- -CGuGCGGGgCCag-CGCGGGCagUCGu -5'
9349 3' -63.3 NC_002512.2 + 147546 0.66 0.692806
Target:  5'- cGCACGCCcaccgcuacccgCCGGggCG-GCCCG-CGGCc -3'
miRNA:   3'- -CGUGCGG------------GGCCa-GCgCGGGCaGUCGu -5'
9349 3' -63.3 NC_002512.2 + 123650 0.66 0.691874
Target:  5'- aGCGCGCCgCGGUucccgcgCGCGCgCCGcCAuggccGCGg -3'
miRNA:   3'- -CGUGCGGgGCCA-------GCGCG-GGCaGU-----CGU- -5'
9349 3' -63.3 NC_002512.2 + 2228 0.66 0.683472
Target:  5'- cCGCGCUUCGuGUCuCGCCUG-CGGCAc -3'
miRNA:   3'- cGUGCGGGGC-CAGcGCGGGCaGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 107849 0.66 0.683472
Target:  5'- cGC-CGCCCCGGgCGUGCgCG--AGCGc -3'
miRNA:   3'- -CGuGCGGGGCCaGCGCGgGCagUCGU- -5'
9349 3' -63.3 NC_002512.2 + 128863 0.66 0.674103
Target:  5'- cGCGgGCCCUGGUgcUGCGCCUGcUgAGgGa -3'
miRNA:   3'- -CGUgCGGGGCCA--GCGCGGGC-AgUCgU- -5'
9349 3' -63.3 NC_002512.2 + 199137 0.66 0.674103
Target:  5'- -aGCGUCCUcaGGUgcuucucguaCGCGCCCuUCGGCAg -3'
miRNA:   3'- cgUGCGGGG--CCA----------GCGCGGGcAGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.