miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9350 3' -55.2 NC_002512.2 + 167273 0.66 0.974006
Target:  5'- cGGGGAagcugGCCGCcGCcGUCACC-CGCGa -3'
miRNA:   3'- aCCUCU-----CGGUGaUGcUAGUGGcGUGC- -5'
9350 3' -55.2 NC_002512.2 + 186201 0.66 0.974006
Target:  5'- cUGGAGGGCUcggGCgcCGAUgaCGCCGCGg- -3'
miRNA:   3'- -ACCUCUCGG---UGauGCUA--GUGGCGUgc -5'
9350 3' -55.2 NC_002512.2 + 111788 0.66 0.971333
Target:  5'- cGGccGGuCCGC-GCGGUCGCCGC-CGg -3'
miRNA:   3'- aCCucUC-GGUGaUGCUAGUGGCGuGC- -5'
9350 3' -55.2 NC_002512.2 + 129862 0.66 0.971333
Target:  5'- cGGAGgAGCCcCU-UGAg-GCCGCACGc -3'
miRNA:   3'- aCCUC-UCGGuGAuGCUagUGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 197588 0.66 0.971333
Target:  5'- gUGGucuGCCACUACGA--GCCGCccuccucauGCGg -3'
miRNA:   3'- -ACCucuCGGUGAUGCUagUGGCG---------UGC- -5'
9350 3' -55.2 NC_002512.2 + 135810 0.66 0.968468
Target:  5'- cGGGGAcGCCG--ACGGUCccguucccGCCGCGCc -3'
miRNA:   3'- aCCUCU-CGGUgaUGCUAG--------UGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 202365 0.66 0.968468
Target:  5'- uUGGucuGAGCCGCcucCGA-CGCUGUGCGg -3'
miRNA:   3'- -ACCu--CUCGGUGau-GCUaGUGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 191333 0.66 0.968468
Target:  5'- cGcGGGuGCCGuCcGCGAcggggguaggUCGCCGCGCGa -3'
miRNA:   3'- aC-CUCuCGGU-GaUGCU----------AGUGGCGUGC- -5'
9350 3' -55.2 NC_002512.2 + 204734 0.66 0.962139
Target:  5'- cGGGGGGCCggacccggguGCUcaGCGAUCccgGCCugggGCGCGg -3'
miRNA:   3'- aCCUCUCGG----------UGA--UGCUAG---UGG----CGUGC- -5'
9350 3' -55.2 NC_002512.2 + 89335 0.66 0.962139
Target:  5'- cGGAGAGCUcguGCaccuCGGUgGCCGCGg- -3'
miRNA:   3'- aCCUCUCGG---UGau--GCUAgUGGCGUgc -5'
9350 3' -55.2 NC_002512.2 + 103712 0.66 0.962139
Target:  5'- aGGGGGcGCCGCcAUGAUCcugaaccggACCGCgGCGa -3'
miRNA:   3'- aCCUCU-CGGUGaUGCUAG---------UGGCG-UGC- -5'
9350 3' -55.2 NC_002512.2 + 116678 0.66 0.962139
Target:  5'- cGGAccgcGAGCCGCUGgcCGA-CGCCGCu-- -3'
miRNA:   3'- aCCU----CUCGGUGAU--GCUaGUGGCGugc -5'
9350 3' -55.2 NC_002512.2 + 125219 0.66 0.962139
Target:  5'- aGGAGGaacGCCGCUcccagcgcAUGAUC-CUGCACu -3'
miRNA:   3'- aCCUCU---CGGUGA--------UGCUAGuGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 222401 0.66 0.962139
Target:  5'- aUGGAGcGCCGCggcuucgGCGGgggccggcaGCCGCGCc -3'
miRNA:   3'- -ACCUCuCGGUGa------UGCUag-------UGGCGUGc -5'
9350 3' -55.2 NC_002512.2 + 127671 0.66 0.962139
Target:  5'- -cGAGGGCCGCUccggccgcgGCGAUCucCCGCu-- -3'
miRNA:   3'- acCUCUCGGUGA---------UGCUAGu-GGCGugc -5'
9350 3' -55.2 NC_002512.2 + 120250 0.67 0.958664
Target:  5'- gUGGAGGGCCuACccGCGGg-ACCGC-CGg -3'
miRNA:   3'- -ACCUCUCGG-UGa-UGCUagUGGCGuGC- -5'
9350 3' -55.2 NC_002512.2 + 226385 0.67 0.954977
Target:  5'- gUGGAGGGCCGacgACGG-CGCCGggacccguCGCGu -3'
miRNA:   3'- -ACCUCUCGGUga-UGCUaGUGGC--------GUGC- -5'
9350 3' -55.2 NC_002512.2 + 170770 0.67 0.954977
Target:  5'- aUGGAGcGCgACgggcGCGAUCGgCGCgACGa -3'
miRNA:   3'- -ACCUCuCGgUGa---UGCUAGUgGCG-UGC- -5'
9350 3' -55.2 NC_002512.2 + 118412 0.67 0.954977
Target:  5'- cUGGAGAGCCaACUGa-AggGCCGgGCGa -3'
miRNA:   3'- -ACCUCUCGG-UGAUgcUagUGGCgUGC- -5'
9350 3' -55.2 NC_002512.2 + 102470 0.67 0.954977
Target:  5'- aGGAGGGCgCGCccgucgcggugGCGGUC-CCGCAgGc -3'
miRNA:   3'- aCCUCUCG-GUGa----------UGCUAGuGGCGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.