miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9350 5' -59.3 NC_002512.2 + 132735 0.66 0.888529
Target:  5'- uGCCGcaggcGCAGCGCGG---CGuCGUCCc -3'
miRNA:   3'- -CGGCa----CGUCGCGCCagaGCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 105666 0.66 0.888529
Target:  5'- aGCCGcagcaGaCGGCGCGGUaCUCG-CGgugCCUc -3'
miRNA:   3'- -CGGCa----C-GUCGCGCCA-GAGCuGCa--GGA- -5'
9350 5' -59.3 NC_002512.2 + 117966 0.66 0.888529
Target:  5'- aGCUGUuccgGCAcccgaacaacccGCGCGGccgCUCGuCGUCCa -3'
miRNA:   3'- -CGGCA----CGU------------CGCGCCa--GAGCuGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 180444 0.66 0.884636
Target:  5'- cCCGgGCGGCGCccgucauuucucgacGG-CUCGGCGUCg- -3'
miRNA:   3'- cGGCaCGUCGCG---------------CCaGAGCUGCAGga -5'
9350 5' -59.3 NC_002512.2 + 33081 0.66 0.881336
Target:  5'- aCCG-GCGcGCGCGGUCaUCGGgaccauaucucgcUGUCCg -3'
miRNA:   3'- cGGCaCGU-CGCGCCAG-AGCU-------------GCAGGa -5'
9350 5' -59.3 NC_002512.2 + 172144 0.66 0.875273
Target:  5'- aGCgCGacggGCAGCG-GGUCUacuGCGUCCUc -3'
miRNA:   3'- -CG-GCa---CGUCGCgCCAGAgc-UGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 91876 0.66 0.875273
Target:  5'- cGCCGUcCGGCGCGGg--CGGCGg--- -3'
miRNA:   3'- -CGGCAcGUCGCGCCagaGCUGCagga -5'
9350 5' -59.3 NC_002512.2 + 218223 0.66 0.871143
Target:  5'- gGCCGcgGCGGgcCGCGGcgCcgauauauguccgggUCGGCGUCCUc -3'
miRNA:   3'- -CGGCa-CGUC--GCGCCa-G---------------AGCUGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 157166 0.66 0.868352
Target:  5'- gGCCGgGCGGCGUGGgcggCggcgCGACGaUCg- -3'
miRNA:   3'- -CGGCaCGUCGCGCCa---Ga---GCUGC-AGga -5'
9350 5' -59.3 NC_002512.2 + 171861 0.66 0.861241
Target:  5'- gGCCGggaggggGCGGaaCGCcGUcCUCGGCGUCCc -3'
miRNA:   3'- -CGGCa------CGUC--GCGcCA-GAGCUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 207771 0.66 0.861241
Target:  5'- cGCCGUGguGguUGCGGga-CGGCGUCg- -3'
miRNA:   3'- -CGGCACguC--GCGCCagaGCUGCAGga -5'
9350 5' -59.3 NC_002512.2 + 168745 0.66 0.859796
Target:  5'- gGCCGUGCAgGCGCugcggaagaccuGGUCguugccguacggCGACagGUCCa -3'
miRNA:   3'- -CGGCACGU-CGCG------------CCAGa-----------GCUG--CAGGa -5'
9350 5' -59.3 NC_002512.2 + 199877 0.66 0.853946
Target:  5'- uCUGUGCGGCGgcucgcccUGGUCUCGAgacCGcCCg -3'
miRNA:   3'- cGGCACGUCGC--------GCCAGAGCU---GCaGGa -5'
9350 5' -59.3 NC_002512.2 + 191590 0.67 0.846471
Target:  5'- aGCC-UGUucggucGCGCGGUCgaguccUCGGCGUCUUc -3'
miRNA:   3'- -CGGcACGu-----CGCGCCAG------AGCUGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 150654 0.67 0.846471
Target:  5'- cGCUGcGCAGCuCGaGcCUCGAgGUCCg -3'
miRNA:   3'- -CGGCaCGUCGcGC-CaGAGCUgCAGGa -5'
9350 5' -59.3 NC_002512.2 + 173917 0.67 0.846471
Target:  5'- gGUCGUGUGGCGUcccguGGUCUCuuuCGUCUc -3'
miRNA:   3'- -CGGCACGUCGCG-----CCAGAGcu-GCAGGa -5'
9350 5' -59.3 NC_002512.2 + 225253 0.67 0.841902
Target:  5'- cCCGUGCuccuucuccgccaggAGgGCGucCUCGGCGUCCg -3'
miRNA:   3'- cGGCACG---------------UCgCGCcaGAGCUGCAGGa -5'
9350 5' -59.3 NC_002512.2 + 95571 0.67 0.838822
Target:  5'- uCCGU-CGGCGcCGGcCccggCGACGUCCUc -3'
miRNA:   3'- cGGCAcGUCGC-GCCaGa---GCUGCAGGA- -5'
9350 5' -59.3 NC_002512.2 + 131300 0.67 0.838822
Target:  5'- -aCGUGCAGCGCGGa--CGACccgCCg -3'
miRNA:   3'- cgGCACGUCGCGCCagaGCUGca-GGa -5'
9350 5' -59.3 NC_002512.2 + 131205 0.67 0.831006
Target:  5'- aGUCGUGC-GCGgccaGGcgCUCGACGUCg- -3'
miRNA:   3'- -CGGCACGuCGCg---CCa-GAGCUGCAGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.