miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9351 5' -63 NC_002512.2 + 228392 0.66 0.787164
Target:  5'- uCCgGCGUgaucugUCCGGGg-GACGgggcgcugggggGCGGGGGc -3'
miRNA:   3'- -GGgCGCG------AGGCCCagCUGC------------UGCCCCU- -5'
9351 5' -63 NC_002512.2 + 189525 0.66 0.787164
Target:  5'- gCCCGgGCUcgCCGcGGUCGGCGuccGCGGc-- -3'
miRNA:   3'- -GGGCgCGA--GGC-CCAGCUGC---UGCCccu -5'
9351 5' -63 NC_002512.2 + 159094 0.66 0.787164
Target:  5'- aCCUGCGCaaCGGcgacGagGACGACGGGa- -3'
miRNA:   3'- -GGGCGCGagGCC----CagCUGCUGCCCcu -5'
9351 5' -63 NC_002512.2 + 123583 0.66 0.787164
Target:  5'- --gGCGCUgCGGGUCugagagGACGccGCGGcGGAa -3'
miRNA:   3'- gggCGCGAgGCCCAG------CUGC--UGCC-CCU- -5'
9351 5' -63 NC_002512.2 + 4354 0.66 0.778789
Target:  5'- cUCgGCGUUCCGGGUaaGAcCGACuGGGu -3'
miRNA:   3'- -GGgCGCGAGGCCCAg-CU-GCUGcCCCu -5'
9351 5' -63 NC_002512.2 + 149399 0.66 0.778789
Target:  5'- cUCCG-GCUCCucgacGGGcCGcgaggggaccGCGGCGGGGGc -3'
miRNA:   3'- -GGGCgCGAGG-----CCCaGC----------UGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 93677 0.66 0.778789
Target:  5'- cCCCGCGCaccaggccgCCGGcGUCGACGcgauccCGGcGAc -3'
miRNA:   3'- -GGGCGCGa--------GGCC-CAGCUGCu-----GCCcCU- -5'
9351 5' -63 NC_002512.2 + 210425 0.66 0.778789
Target:  5'- --gGCGaggUCCGGGaugUGGCGuCGGGGAc -3'
miRNA:   3'- gggCGCg--AGGCCCa--GCUGCuGCCCCU- -5'
9351 5' -63 NC_002512.2 + 181552 0.66 0.777945
Target:  5'- gCCCGCGCgaugUCCucguucgugGGGUccgucugCGGCGGCaGGGGc -3'
miRNA:   3'- -GGGCGCG----AGG---------CCCA-------GCUGCUGcCCCU- -5'
9351 5' -63 NC_002512.2 + 153334 0.66 0.770305
Target:  5'- uUCCGCuggGCcggUCCGGGUCGGCGGgucccgcugggcUGGGcGGc -3'
miRNA:   3'- -GGGCG---CG---AGGCCCAGCUGCU------------GCCC-CU- -5'
9351 5' -63 NC_002512.2 + 213085 0.66 0.770305
Target:  5'- -aCGUGCUCUucGUCGGCGGCGaGGAc -3'
miRNA:   3'- ggGCGCGAGGccCAGCUGCUGCcCCU- -5'
9351 5' -63 NC_002512.2 + 53365 0.66 0.770305
Target:  5'- cUCCGCacauagaggacGCUCCGGagacCGAgGACGaGGGAc -3'
miRNA:   3'- -GGGCG-----------CGAGGCCca--GCUgCUGC-CCCU- -5'
9351 5' -63 NC_002512.2 + 81821 0.66 0.770305
Target:  5'- gCCGCGagguCUCCGagaGGaCGACGACgagcgaGGGGAu -3'
miRNA:   3'- gGGCGC----GAGGC---CCaGCUGCUG------CCCCU- -5'
9351 5' -63 NC_002512.2 + 154972 0.66 0.770305
Target:  5'- aUCCGC-CUCCGGGccuccgcguccgUCG-CGACGaGGAu -3'
miRNA:   3'- -GGGCGcGAGGCCC------------AGCuGCUGCcCCU- -5'
9351 5' -63 NC_002512.2 + 191320 0.66 0.770305
Target:  5'- -aCGCGggUCGGGaCGcgggugccguccGCGACGGGGGu -3'
miRNA:   3'- ggGCGCgaGGCCCaGC------------UGCUGCCCCU- -5'
9351 5' -63 NC_002512.2 + 209093 0.66 0.766883
Target:  5'- gCCCGaCG-UCCGGGUCGucaccccguguccCGACGuccGGGAc -3'
miRNA:   3'- -GGGC-GCgAGGCCCAGCu------------GCUGC---CCCU- -5'
9351 5' -63 NC_002512.2 + 190885 0.66 0.76172
Target:  5'- cCCCGCGUcgCGGGgcgaGGCGAacCGGaGGAa -3'
miRNA:   3'- -GGGCGCGagGCCCag--CUGCU--GCC-CCU- -5'
9351 5' -63 NC_002512.2 + 134787 0.66 0.76172
Target:  5'- aCCCGCGUccCCGGGccCGACGcCGGu-- -3'
miRNA:   3'- -GGGCGCGa-GGCCCa-GCUGCuGCCccu -5'
9351 5' -63 NC_002512.2 + 225385 0.66 0.76172
Target:  5'- cCUCGCGUccauccucuUCgGGGaCGGCGcCGGGGu -3'
miRNA:   3'- -GGGCGCG---------AGgCCCaGCUGCuGCCCCu -5'
9351 5' -63 NC_002512.2 + 195744 0.66 0.76172
Target:  5'- -aC-CGCUCCGaGGUCGuCGGCcggauccuGGGGAc -3'
miRNA:   3'- ggGcGCGAGGC-CCAGCuGCUG--------CCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.