miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9354 3' -46.5 NC_002512.2 + 153053 0.66 0.999999
Target:  5'- cGGGAGcGGUccccGGucGGGUCGGCGgucgagGCGGCg -3'
miRNA:   3'- -CUCUU-UCA----UCuuUCUAGCUGC------UGCCG- -5'
9354 3' -46.5 NC_002512.2 + 154904 0.66 0.999999
Target:  5'- gGGGAGGGUGcuugguGggGGAaaCGugGGCGGa -3'
miRNA:   3'- -CUCUUUCAU------CuuUCUa-GCugCUGCCg -5'
9354 3' -46.5 NC_002512.2 + 122932 0.66 0.999999
Target:  5'- cGAGGacGAGgacgAGGAGGAcuccgUCGACGA-GGUg -3'
miRNA:   3'- -CUCU--UUCa---UCUUUCU-----AGCUGCUgCCG- -5'
9354 3' -46.5 NC_002512.2 + 226257 0.66 0.999999
Target:  5'- gGAGGAGGagaGGAGAGAgcucaCGACcGCGGg -3'
miRNA:   3'- -CUCUUUCa--UCUUUCUa----GCUGcUGCCg -5'
9354 3' -46.5 NC_002512.2 + 223922 0.66 0.999999
Target:  5'- cGAG-AGGUcgagccggacGGGGAGGUCGAUcccugggGACGGUu -3'
miRNA:   3'- -CUCuUUCA----------UCUUUCUAGCUG-------CUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 149291 0.66 0.999998
Target:  5'- cGAGGAGGgc--GAGAUCGuCGACcGCc -3'
miRNA:   3'- -CUCUUUCaucuUUCUAGCuGCUGcCG- -5'
9354 3' -46.5 NC_002512.2 + 213813 0.66 0.999998
Target:  5'- cGGGAGGGUucccuGGAcGAGAgucUCGAgGcGCGGCg -3'
miRNA:   3'- -CUCUUUCA-----UCU-UUCU---AGCUgC-UGCCG- -5'
9354 3' -46.5 NC_002512.2 + 100938 0.66 0.999998
Target:  5'- gGAGAAgucccagccgcGGUAGuuauAGAGGUCGcuguCGAgGGCg -3'
miRNA:   3'- -CUCUU-----------UCAUC----UUUCUAGCu---GCUgCCG- -5'
9354 3' -46.5 NC_002512.2 + 107169 0.66 0.999998
Target:  5'- aGAGAGGGUGuccuGGUUgaaGACGACGuGCa -3'
miRNA:   3'- -CUCUUUCAUcuuuCUAG---CUGCUGC-CG- -5'
9354 3' -46.5 NC_002512.2 + 149575 0.66 0.999997
Target:  5'- aGGGAGAGgaggGGAccGAGAccgcCGACGACGa- -3'
miRNA:   3'- -CUCUUUCa---UCU--UUCUa---GCUGCUGCcg -5'
9354 3' -46.5 NC_002512.2 + 210274 0.66 0.999997
Target:  5'- cGGGGGAG-AGGGAGGUgGGCGGa-GCg -3'
miRNA:   3'- -CUCUUUCaUCUUUCUAgCUGCUgcCG- -5'
9354 3' -46.5 NC_002512.2 + 227336 0.66 0.999997
Target:  5'- cGAGGAAGgggacGGAGAGA-CGG-GACGGa -3'
miRNA:   3'- -CUCUUUCa----UCUUUCUaGCUgCUGCCg -5'
9354 3' -46.5 NC_002512.2 + 170778 0.66 0.999997
Target:  5'- -cGAcGGgcgcGAucGGcgCGACGACGGCg -3'
miRNA:   3'- cuCUuUCau--CUu-UCuaGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 192830 0.66 0.999996
Target:  5'- cGGGGccAGGUGGAcGAGGUUGACGGa-GCg -3'
miRNA:   3'- -CUCU--UUCAUCU-UUCUAGCUGCUgcCG- -5'
9354 3' -46.5 NC_002512.2 + 212414 0.66 0.999996
Target:  5'- cGAGGAcgacGGgcGGGAGGUCGAguuCGGgcCGGCc -3'
miRNA:   3'- -CUCUU----UCauCUUUCUAGCU---GCU--GCCG- -5'
9354 3' -46.5 NC_002512.2 + 109558 0.66 0.999996
Target:  5'- cGGAGA--AGggGGA-CG-CGACGGCc -3'
miRNA:   3'- cUCUUUcaUCuuUCUaGCuGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 188924 0.66 0.999996
Target:  5'- gGAGAGucccGGUGGcGGGGcgCGGCGGuCGGUu -3'
miRNA:   3'- -CUCUU----UCAUC-UUUCuaGCUGCU-GCCG- -5'
9354 3' -46.5 NC_002512.2 + 205374 0.66 0.999996
Target:  5'- cGGGAAGGcGGucAGGcccaggaaGGCGGCGGCg -3'
miRNA:   3'- -CUCUUUCaUCuuUCUag------CUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 212699 0.66 0.999996
Target:  5'- uGGGGAAGgAGGAAGuaaaacgGugGGCGGUg -3'
miRNA:   3'- -CUCUUUCaUCUUUCuag----CugCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 121265 0.66 0.999996
Target:  5'- aGGAGAGUAacGAGAGAcggGACGggcccGCGGCc -3'
miRNA:   3'- cUCUUUCAU--CUUUCUag-CUGC-----UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.