miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9355 5' -53.6 NC_002512.2 + 188669 0.66 0.99128
Target:  5'- cGuCGUCcGACCGCGGCGgucUCGgGGa- -3'
miRNA:   3'- uCuGCAGuUUGGCGCUGC---AGCgUCag -5'
9355 5' -53.6 NC_002512.2 + 95955 0.66 0.99128
Target:  5'- cGGGcCGUCGGGCCGCcGcCGUacaGCAGg- -3'
miRNA:   3'- -UCU-GCAGUUUGGCG-CuGCAg--CGUCag -5'
9355 5' -53.6 NC_002512.2 + 88963 0.66 0.99128
Target:  5'- cGcCGUCccGAGCCGCcGCGUCGUccccGUCg -3'
miRNA:   3'- uCuGCAG--UUUGGCGcUGCAGCGu---CAG- -5'
9355 5' -53.6 NC_002512.2 + 78328 0.66 0.99128
Target:  5'- cGAcCGUcCGGACCGCGGaagguUCGuCAGUCg -3'
miRNA:   3'- uCU-GCA-GUUUGGCGCUgc---AGC-GUCAG- -5'
9355 5' -53.6 NC_002512.2 + 185204 0.66 0.991166
Target:  5'- cGGCgGUCGAcGCCGCGguggcccGCGUCGUGGa- -3'
miRNA:   3'- uCUG-CAGUU-UGGCGC-------UGCAGCGUCag -5'
9355 5' -53.6 NC_002512.2 + 144580 0.66 0.99058
Target:  5'- -uACGUCGAGCgGCaGGCGUCGauccccucgcacgaGGUCc -3'
miRNA:   3'- ucUGCAGUUUGgCG-CUGCAGCg-------------UCAG- -5'
9355 5' -53.6 NC_002512.2 + 190959 0.66 0.990089
Target:  5'- cGGGCG-CccGCCGCGGCGgccccuccggCGCcGUCg -3'
miRNA:   3'- -UCUGCaGuuUGGCGCUGCa---------GCGuCAG- -5'
9355 5' -53.6 NC_002512.2 + 149410 0.66 0.990089
Target:  5'- cGACGggccgCGagggGACCGCGGCGggggcgggCGCGGg- -3'
miRNA:   3'- uCUGCa----GU----UUGGCGCUGCa-------GCGUCag -5'
9355 5' -53.6 NC_002512.2 + 226557 0.66 0.988775
Target:  5'- aAGGCGUCGGACUcCGGC-UCGCGcUCc -3'
miRNA:   3'- -UCUGCAGUUUGGcGCUGcAGCGUcAG- -5'
9355 5' -53.6 NC_002512.2 + 95027 0.66 0.988775
Target:  5'- cGGCGUCGc-CCGaGACGUCGCGc-- -3'
miRNA:   3'- uCUGCAGUuuGGCgCUGCAGCGUcag -5'
9355 5' -53.6 NC_002512.2 + 113724 0.66 0.988775
Target:  5'- cGACG-CGGGCgGCGAUcugcgggccgagGUgCGCGGUCa -3'
miRNA:   3'- uCUGCaGUUUGgCGCUG------------CA-GCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 122831 0.66 0.988775
Target:  5'- gAGAUGg-AGGCCGCGACgGUCGCc--- -3'
miRNA:   3'- -UCUGCagUUUGGCGCUG-CAGCGucag -5'
9355 5' -53.6 NC_002512.2 + 124278 0.66 0.988775
Target:  5'- cGGCGUCGGAcCCG-GGCGU-GCGGcUCg -3'
miRNA:   3'- uCUGCAGUUU-GGCgCUGCAgCGUC-AG- -5'
9355 5' -53.6 NC_002512.2 + 198022 0.66 0.988775
Target:  5'- gGGGCGagGGACgCGCGcGCGaggggaCGCGGUCg -3'
miRNA:   3'- -UCUGCagUUUG-GCGC-UGCa-----GCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 201326 0.66 0.988775
Target:  5'- --cCGUCu-GCCGCGACGUCaGCGu-- -3'
miRNA:   3'- ucuGCAGuuUGGCGCUGCAG-CGUcag -5'
9355 5' -53.6 NC_002512.2 + 180289 0.66 0.987924
Target:  5'- cGGCGUucccgucgcccucgaCAGGCgcaGCGGCGUCGUcaGGUCc -3'
miRNA:   3'- uCUGCA---------------GUUUGg--CGCUGCAGCG--UCAG- -5'
9355 5' -53.6 NC_002512.2 + 132019 0.66 0.987329
Target:  5'- gGGACcUC-GGCgGCGACGUCGuCGGcCa -3'
miRNA:   3'- -UCUGcAGuUUGgCGCUGCAGC-GUCaG- -5'
9355 5' -53.6 NC_002512.2 + 73341 0.66 0.987329
Target:  5'- cAGcCGUCAcgcgcuCCGaacCGGCGUCGCAGg- -3'
miRNA:   3'- -UCuGCAGUuu----GGC---GCUGCAGCGUCag -5'
9355 5' -53.6 NC_002512.2 + 219042 0.66 0.987329
Target:  5'- -uACGUCGucGGCCGCGGCG-CGgGGcUCc -3'
miRNA:   3'- ucUGCAGU--UUGGCGCUGCaGCgUC-AG- -5'
9355 5' -53.6 NC_002512.2 + 200712 0.66 0.987329
Target:  5'- uGGCGUCGGGCUGCcGCccgGCGGUCc -3'
miRNA:   3'- uCUGCAGUUUGGCGcUGcagCGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.