miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9357 5' -59.1 NC_002512.2 + 119219 0.65 0.887429
Target:  5'- gCUGUCGaugaucgccaACCuGGCGUCGGagguggugaugacGUACGUGCg -3'
miRNA:   3'- -GACGGCg---------UGG-CCGCAGCU-------------CGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 186512 0.66 0.881481
Target:  5'- -gGCCGUccggGCCaGCGUCGAcCucuGCGUGCa -3'
miRNA:   3'- gaCGGCG----UGGcCGCAGCUcG---UGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 175645 0.66 0.881481
Target:  5'- cCUG-CGCugCGGaCGUgCGAGUGCGUc- -3'
miRNA:   3'- -GACgGCGugGCC-GCA-GCUCGUGCAug -5'
9357 5' -59.1 NC_002512.2 + 150337 0.66 0.881481
Target:  5'- -cGCCGCGgCGGUGaUgGAGUGCG-ACc -3'
miRNA:   3'- gaCGGCGUgGCCGC-AgCUCGUGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 153382 0.66 0.881481
Target:  5'- gCUGgCGguCCGGagcgaCGUgGAGCGCGgcgGCg -3'
miRNA:   3'- -GACgGCguGGCC-----GCAgCUCGUGCa--UG- -5'
9357 5' -59.1 NC_002512.2 + 117554 0.66 0.874682
Target:  5'- gCUGCUGUACagcgccaaGGCGUCGAugGCGCu--- -3'
miRNA:   3'- -GACGGCGUGg-------CCGCAGCU--CGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 135862 0.66 0.874682
Target:  5'- -cGCCGCgaaACCGaGCGUCcGGGuCACGa-- -3'
miRNA:   3'- gaCGGCG---UGGC-CGCAG-CUC-GUGCaug -5'
9357 5' -59.1 NC_002512.2 + 169076 0.66 0.874682
Target:  5'- -cGCgGCGgCGGCGUCGcGGCccGCGUc- -3'
miRNA:   3'- gaCGgCGUgGCCGCAGC-UCG--UGCAug -5'
9357 5' -59.1 NC_002512.2 + 144621 0.66 0.867685
Target:  5'- -cGCCGCGCUGGaCGUgGcGGcCACGcgGCg -3'
miRNA:   3'- gaCGGCGUGGCC-GCAgC-UC-GUGCa-UG- -5'
9357 5' -59.1 NC_002512.2 + 158312 0.66 0.867685
Target:  5'- -gGCCGCGgucguCCGGCG-CGAGUcCGcGCu -3'
miRNA:   3'- gaCGGCGU-----GGCCGCaGCUCGuGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 211299 0.66 0.867685
Target:  5'- gUGCgGCAUgCGGCGgucCGAGCGCa--- -3'
miRNA:   3'- gACGgCGUG-GCCGCa--GCUCGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 189534 0.66 0.867685
Target:  5'- -cGCCGCgguCGGCGUCcgcggcaucuGCugGUGCg -3'
miRNA:   3'- gaCGGCGug-GCCGCAGcu--------CGugCAUG- -5'
9357 5' -59.1 NC_002512.2 + 200667 0.66 0.867685
Target:  5'- --cCCGCgGCCGGCGuUCGGGUAgaaggUGUACu -3'
miRNA:   3'- gacGGCG-UGGCCGC-AGCUCGU-----GCAUG- -5'
9357 5' -59.1 NC_002512.2 + 207976 0.66 0.867685
Target:  5'- cCU-CCGUAgCGGCGaCGAG-ACGUGCu -3'
miRNA:   3'- -GAcGGCGUgGCCGCaGCUCgUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 74507 0.66 0.865548
Target:  5'- -cGCC-CGCCGGCGccgccgccccgaccUCGAGCGCc--- -3'
miRNA:   3'- gaCGGcGUGGCCGC--------------AGCUCGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 107228 0.66 0.860496
Target:  5'- -aGCCGCGgucaccgucguCCGGC-UCGAaacGCAgGUGCg -3'
miRNA:   3'- gaCGGCGU-----------GGCCGcAGCU---CGUgCAUG- -5'
9357 5' -59.1 NC_002512.2 + 222190 0.66 0.860496
Target:  5'- -gGCCGCgGCCGGCGUCGuccGUuucuuCGUc- -3'
miRNA:   3'- gaCGGCG-UGGCCGCAGCu--CGu----GCAug -5'
9357 5' -59.1 NC_002512.2 + 107849 0.66 0.860496
Target:  5'- -cGCCGCcCCgGGCGUgcgCGAGCGCc--- -3'
miRNA:   3'- gaCGGCGuGG-CCGCA---GCUCGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 90384 0.66 0.853121
Target:  5'- uCUGCaCGCucgaggucuuGCCGGCGcCG-GC-CGUGCc -3'
miRNA:   3'- -GACG-GCG----------UGGCCGCaGCuCGuGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 227098 0.66 0.850872
Target:  5'- -gGCCGCcgGCCGG-GUCGGGCucagacgggggagcGgGUGCa -3'
miRNA:   3'- gaCGGCG--UGGCCgCAGCUCG--------------UgCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.