miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9358 3' -52.4 NC_002512.2 + 167417 0.66 0.996216
Target:  5'- aGGGCgUCGAucu--CGUGcGGCGGCa -3'
miRNA:   3'- cUCCGgAGCUuuguuGCACcUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 207597 0.66 0.996216
Target:  5'- -uGGCCUgCGAcGGCGGCGgcugcuGCGGCg -3'
miRNA:   3'- cuCCGGA-GCU-UUGUUGCaccu--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 189693 0.66 0.996216
Target:  5'- -cGGcCCUCGucguCGACGUccgggggaugucGGGGCGGUg -3'
miRNA:   3'- cuCC-GGAGCuuu-GUUGCA------------CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 146745 0.66 0.996158
Target:  5'- cGGGCC-CGAcgaccucGACGACG-GGGACGa- -3'
miRNA:   3'- cUCCGGaGCU-------UUGUUGCaCCUUGCcg -5'
9358 3' -52.4 NC_002512.2 + 101873 0.66 0.995853
Target:  5'- -cGGCCgcagcagccgcgggCGAAAgcgcggggacgcCGACG-GGGGCGGCg -3'
miRNA:   3'- cuCCGGa-------------GCUUU------------GUUGCaCCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 222327 0.66 0.995661
Target:  5'- gGAGGCUgCG--GCGGCGccuccaggaggaggaGGAGCGGCa -3'
miRNA:   3'- -CUCCGGaGCuuUGUUGCa--------------CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 218290 0.66 0.995595
Target:  5'- -cGGCCUCGggGucccCGGCccuGGGCGGCc -3'
miRNA:   3'- cuCCGGAGCuuU----GUUGcacCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 209630 0.66 0.995595
Target:  5'- -cGGCCggaCGAgGACGACGacGGcuGCGGCg -3'
miRNA:   3'- cuCCGGa--GCU-UUGUUGCa-CCu-UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 123530 0.66 0.995595
Target:  5'- cGGGCCgCGAggUGGCGagcucgcGGGACGaGCg -3'
miRNA:   3'- cUCCGGaGCUuuGUUGCa------CCUUGC-CG- -5'
9358 3' -52.4 NC_002512.2 + 89608 0.66 0.995595
Target:  5'- -uGGCCUCc--AUGACGUGGGcCGGa -3'
miRNA:   3'- cuCCGGAGcuuUGUUGCACCUuGCCg -5'
9358 3' -52.4 NC_002512.2 + 190437 0.66 0.995325
Target:  5'- cGGGCCgucaccgacCGGGACGugaccuccaccccCGUGGAcuACGGCg -3'
miRNA:   3'- cUCCGGa--------GCUUUGUu------------GCACCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 123789 0.66 0.994893
Target:  5'- cGGGCgagUCGAAGCGGC-UGaaGAGCGGCc -3'
miRNA:   3'- cUCCGg--AGCUUUGUUGcAC--CUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 212893 0.66 0.994893
Target:  5'- -cGGCCauggacCGAGuCGGCGccgggaGGAACGGCa -3'
miRNA:   3'- cuCCGGa-----GCUUuGUUGCa-----CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 190206 0.66 0.994893
Target:  5'- aAGGUCggCGgcGCGGuCGUccGGGACGGCc -3'
miRNA:   3'- cUCCGGa-GCuuUGUU-GCA--CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 93758 0.66 0.994893
Target:  5'- gGAGGgCUCGGAGgGAgGgagggaggucgGGAGCGGa -3'
miRNA:   3'- -CUCCgGAGCUUUgUUgCa----------CCUUGCCg -5'
9358 3' -52.4 NC_002512.2 + 184320 0.66 0.994103
Target:  5'- -uGGCCa-GcuGCGACGUGcGcGACGGCa -3'
miRNA:   3'- cuCCGGagCuuUGUUGCAC-C-UUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 221737 0.66 0.994103
Target:  5'- cGAGcGCCUggCGGAcGCGcCGUcGAACGGCa -3'
miRNA:   3'- -CUC-CGGA--GCUU-UGUuGCAcCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 196448 0.66 0.993217
Target:  5'- cGGGGCCaUGGAAU-ACcUGGGcuGCGGCg -3'
miRNA:   3'- -CUCCGGaGCUUUGuUGcACCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 143 0.66 0.993217
Target:  5'- gGGGaGCCgggCGggGCGccgGCGgaGGAGCGcGCg -3'
miRNA:   3'- -CUC-CGGa--GCuuUGU---UGCa-CCUUGC-CG- -5'
9358 3' -52.4 NC_002512.2 + 226599 0.66 0.993217
Target:  5'- -cGGCC-CGggGgAGgagGGGACGGCg -3'
miRNA:   3'- cuCCGGaGCuuUgUUgcaCCUUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.