miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9358 5' -55.5 NC_002512.2 + 137055 0.66 0.97122
Target:  5'- cUGGgGCGUgauGACGGAGg--CGGGcauGCu -3'
miRNA:   3'- -AUCgCGCAag-CUGCCUCaaaGCCC---CG- -5'
9358 5' -55.5 NC_002512.2 + 281 0.66 0.97122
Target:  5'- gAGCG-GcgCGACGGGGggcCaGGGCa -3'
miRNA:   3'- aUCGCgCaaGCUGCCUCaaaGcCCCG- -5'
9358 5' -55.5 NC_002512.2 + 174488 0.66 0.97122
Target:  5'- cGGCaCGcUCGGCGGGGcgcUGGGGUu -3'
miRNA:   3'- aUCGcGCaAGCUGCCUCaaaGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 194994 0.66 0.97122
Target:  5'- cGGCGCaagaGggCGACGGcGGUccCGGcGGCg -3'
miRNA:   3'- aUCGCG----CaaGCUGCC-UCAaaGCC-CCG- -5'
9358 5' -55.5 NC_002512.2 + 217877 0.66 0.97122
Target:  5'- gAGCGCGUccgagaUCGGCGGccgcGUcgUCGaGcGGCg -3'
miRNA:   3'- aUCGCGCA------AGCUGCCu---CAa-AGC-C-CCG- -5'
9358 5' -55.5 NC_002512.2 + 229684 0.66 0.97122
Target:  5'- gAGCG-GcgCGACGGGGggcCaGGGCa -3'
miRNA:   3'- aUCGCgCaaGCUGCCUCaaaGcCCCG- -5'
9358 5' -55.5 NC_002512.2 + 164250 0.66 0.96836
Target:  5'- cGGCGCcg-UGGCGGGGgccgUCGGGuCg -3'
miRNA:   3'- aUCGCGcaaGCUGCCUCaa--AGCCCcG- -5'
9358 5' -55.5 NC_002512.2 + 91883 0.66 0.96836
Target:  5'- cGGCGCGggCGGCGGcg---CGGcGCa -3'
miRNA:   3'- aUCGCGCaaGCUGCCucaaaGCCcCG- -5'
9358 5' -55.5 NC_002512.2 + 153404 0.66 0.96836
Target:  5'- gAGCGCGg-CGGCGGucgaGGUggCGGaauGGCg -3'
miRNA:   3'- aUCGCGCaaGCUGCC----UCAaaGCC---CCG- -5'
9358 5' -55.5 NC_002512.2 + 128416 0.66 0.965303
Target:  5'- gUGGCGgGgUCGcCGGAGcccuccUCGcGGGCg -3'
miRNA:   3'- -AUCGCgCaAGCuGCCUCaa----AGC-CCCG- -5'
9358 5' -55.5 NC_002512.2 + 101443 0.66 0.965303
Target:  5'- cGGCGCGg-CGACGccGAGag-CGGGGg -3'
miRNA:   3'- aUCGCGCaaGCUGC--CUCaaaGCCCCg -5'
9358 5' -55.5 NC_002512.2 + 226709 0.66 0.965303
Target:  5'- cGGCGuCGagCGACgGGAGgc-CGcGGGCg -3'
miRNA:   3'- aUCGC-GCaaGCUG-CCUCaaaGC-CCCG- -5'
9358 5' -55.5 NC_002512.2 + 186715 0.66 0.958579
Target:  5'- cGGCGgGUUgGGCgaGGAGUcggccaacgUCGcGGGCa -3'
miRNA:   3'- aUCGCgCAAgCUG--CCUCAa--------AGC-CCCG- -5'
9358 5' -55.5 NC_002512.2 + 129234 0.66 0.957861
Target:  5'- -cGCGCGaUCG-CGGGacugcugcgCGGGGCg -3'
miRNA:   3'- auCGCGCaAGCuGCCUcaaa-----GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 156508 0.67 0.954903
Target:  5'- cGGCGgccUGggCGGCGGGGcg-CGGGGg -3'
miRNA:   3'- aUCGC---GCaaGCUGCCUCaaaGCCCCg -5'
9358 5' -55.5 NC_002512.2 + 228394 0.67 0.954903
Target:  5'- cGGCGUGaUCugucCGGGGga-CGGGGCg -3'
miRNA:   3'- aUCGCGCaAGcu--GCCUCaaaGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 95622 0.67 0.954903
Target:  5'- -cGCGCGgaCGACGaAGgccagGGGGCg -3'
miRNA:   3'- auCGCGCaaGCUGCcUCaaag-CCCCG- -5'
9358 5' -55.5 NC_002512.2 + 170782 0.67 0.954903
Target:  5'- gGGCGCGaUCGGCGcGAcga-CGGcGGCg -3'
miRNA:   3'- aUCGCGCaAGCUGC-CUcaaaGCC-CCG- -5'
9358 5' -55.5 NC_002512.2 + 183963 0.67 0.954903
Target:  5'- -cGCGCGcUCgGGCGucGUcgccugUCGGGGCg -3'
miRNA:   3'- auCGCGCaAG-CUGCcuCAa-----AGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 224154 0.67 0.951012
Target:  5'- cGGaCGCGUgaGGCGGGGcg--GGGGCg -3'
miRNA:   3'- aUC-GCGCAagCUGCCUCaaagCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.