miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 3' -60.2 NC_002512.2 + 220003 0.66 0.875259
Target:  5'- cCCCUCGCC-CGGCgggUCGAgagGCCGc -3'
miRNA:   3'- -GGGGGCGGaGUCGaa-GGCUag-CGGCc -5'
9359 3' -60.2 NC_002512.2 + 207163 0.66 0.875259
Target:  5'- gCCgCCCGCggUAGCUgUUGAUgugcCGCCGGg -3'
miRNA:   3'- -GG-GGGCGgaGUCGAaGGCUA----GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 33707 0.66 0.875259
Target:  5'- uUCCCGUCUgcggaaCAGCgucuugcggaUCCGGaCGCCGGu -3'
miRNA:   3'- gGGGGCGGA------GUCGa---------AGGCUaGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 197462 0.66 0.874586
Target:  5'- uCCCUCGCCcgcuucgUCAGCUUCgGGgaGCCc- -3'
miRNA:   3'- -GGGGGCGG-------AGUCGAAGgCUagCGGcc -5'
9359 3' -60.2 NC_002512.2 + 106586 0.66 0.868446
Target:  5'- -aCCCGCUUCuuGGCgaaCCGGgccaGCCGGc -3'
miRNA:   3'- ggGGGCGGAG--UCGaa-GGCUag--CGGCC- -5'
9359 3' -60.2 NC_002512.2 + 132510 0.66 0.868446
Target:  5'- gCCCCCGUCUcCGGCcgCCGcgGUCcCCGc -3'
miRNA:   3'- -GGGGGCGGA-GUCGaaGGC--UAGcGGCc -5'
9359 3' -60.2 NC_002512.2 + 148690 0.66 0.868446
Target:  5'- gCCCUCGUCgccGCUUCgcccgGAUCGUCGGc -3'
miRNA:   3'- -GGGGGCGGaguCGAAGg----CUAGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 151555 0.66 0.868446
Target:  5'- gUCCCgGUCUCGcCUUcCCGAgaGCCGGc -3'
miRNA:   3'- -GGGGgCGGAGUcGAA-GGCUagCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 193271 0.66 0.868446
Target:  5'- gCCCUGCCUCGGCgacCUGugcuucUCGCagcaGGc -3'
miRNA:   3'- gGGGGCGGAGUCGaa-GGCu-----AGCGg---CC- -5'
9359 3' -60.2 NC_002512.2 + 134784 0.66 0.868446
Target:  5'- cCCaCCCGCgUCcccgGGC--CCGA-CGCCGGu -3'
miRNA:   3'- -GG-GGGCGgAG----UCGaaGGCUaGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 214493 0.66 0.86145
Target:  5'- uCUUCCGCCUCcuGCg---GAUCGCCGa -3'
miRNA:   3'- -GGGGGCGGAGu-CGaaggCUAGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 82344 0.66 0.86145
Target:  5'- aCCCaCCGCUuaAGCgUUUCGcgccucgCGCCGGg -3'
miRNA:   3'- -GGG-GGCGGagUCG-AAGGCua-----GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 199974 0.66 0.86145
Target:  5'- aCUCCCGCC---GCgUCCGcgCGcCCGGc -3'
miRNA:   3'- -GGGGGCGGaguCGaAGGCuaGC-GGCC- -5'
9359 3' -60.2 NC_002512.2 + 220299 0.66 0.854275
Target:  5'- -gCCCGCCg-AGCcgCCGGgggGCCGGg -3'
miRNA:   3'- ggGGGCGGagUCGaaGGCUag-CGGCC- -5'
9359 3' -60.2 NC_002512.2 + 171817 0.66 0.854275
Target:  5'- gCUCCUGCUgccCGGCaUCCGGUacCGCgGGa -3'
miRNA:   3'- -GGGGGCGGa--GUCGaAGGCUA--GCGgCC- -5'
9359 3' -60.2 NC_002512.2 + 157569 0.66 0.854275
Target:  5'- gUCCCGCUgggugaacCAGCacuUUCagguGAUCGCCGGc -3'
miRNA:   3'- gGGGGCGGa-------GUCG---AAGg---CUAGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 186817 0.66 0.854275
Target:  5'- gCCCCgggaccggUGCCUCGGCgaggCCcugcgcGUCGCCGa -3'
miRNA:   3'- -GGGG--------GCGGAGUCGaa--GGc-----UAGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 5907 0.66 0.854275
Target:  5'- gCUgCgGUCUCGGCUUCCGAg-GUCGa -3'
miRNA:   3'- -GGgGgCGGAGUCGAAGGCUagCGGCc -5'
9359 3' -60.2 NC_002512.2 + 150140 0.66 0.853548
Target:  5'- aCCCCGCUcgugUCGGCgUCCGccagcccGUCcucgcucucccuGCCGGg -3'
miRNA:   3'- gGGGGCGG----AGUCGaAGGC-------UAG------------CGGCC- -5'
9359 3' -60.2 NC_002512.2 + 134621 0.66 0.849886
Target:  5'- aCCCCGCCguucaggagccgcgCGGCccUCCGGaCGCCc- -3'
miRNA:   3'- gGGGGCGGa-------------GUCGa-AGGCUaGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.