miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 5' -54 NC_002512.2 + 147275 0.66 0.989621
Target:  5'- -cCCGAcccGGGACGccgcgcgucguucccGGGGGGGAGAGGa -3'
miRNA:   3'- caGGCU---UCUUGCc--------------UCCUCCCUCUUCc -5'
9359 5' -54 NC_002512.2 + 153158 0.66 0.989361
Target:  5'- gGUCCGGaaaggcgaccuacGGGGCGGcGGGcagcGGuGGGGAGGGc -3'
miRNA:   3'- -CAGGCU-------------UCUUGCC-UCC----UC-CCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 215138 0.66 0.988127
Target:  5'- gGUCCGcgcGACGGGGGAGGcGAcGAGc -3'
miRNA:   3'- -CAGGCuucUUGCCUCCUCC-CUcUUCc -5'
9359 5' -54 NC_002512.2 + 121358 0.66 0.988127
Target:  5'- -gCCGuuGGACGGcGGaGAGGGccggagAGGAGGg -3'
miRNA:   3'- caGGCuuCUUGCC-UC-CUCCC------UCUUCC- -5'
9359 5' -54 NC_002512.2 + 40806 0.66 0.987983
Target:  5'- -gCCGAAGAAUGGGucguucuGGGGGGAaucGGu -3'
miRNA:   3'- caGGCUUCUUGCCU-------CCUCCCUcuuCC- -5'
9359 5' -54 NC_002512.2 + 226455 0.66 0.986629
Target:  5'- -aCCGAccAGcccCGcGAGGcGGGAGGAGGc -3'
miRNA:   3'- caGGCU--UCuu-GC-CUCCuCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 82597 0.66 0.986629
Target:  5'- aUCUG-GGAuauuagucucuACGGGGGAGGGGGuAAGu -3'
miRNA:   3'- cAGGCuUCU-----------UGCCUCCUCCCUC-UUCc -5'
9359 5' -54 NC_002512.2 + 219846 0.66 0.98499
Target:  5'- gGUCCGGcccgGGGGCGGAucgcGGAcGGGuGAcgAGGc -3'
miRNA:   3'- -CAGGCU----UCUUGCCU----CCU-CCCuCU--UCC- -5'
9359 5' -54 NC_002512.2 + 198012 0.66 0.98499
Target:  5'- --gCGAcGGACGGGGGcgAGGGAcgcgcgcgcGAGGGg -3'
miRNA:   3'- cagGCUuCUUGCCUCC--UCCCU---------CUUCC- -5'
9359 5' -54 NC_002512.2 + 118896 0.66 0.98499
Target:  5'- --gUGAAGAacACGGGGcccgcgcuGuGGGAGAAGGg -3'
miRNA:   3'- cagGCUUCU--UGCCUC--------CuCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 195700 0.66 0.983202
Target:  5'- cGUCCG--GGACGG-GGAGaGGAacgcgacgugGAAGGg -3'
miRNA:   3'- -CAGGCuuCUUGCCuCCUC-CCU----------CUUCC- -5'
9359 5' -54 NC_002512.2 + 196410 0.66 0.983015
Target:  5'- --gCGggGAcGCGGGGGGcggcggccgggucGGGAGAGGu -3'
miRNA:   3'- cagGCuuCU-UGCCUCCU-------------CCCUCUUCc -5'
9359 5' -54 NC_002512.2 + 129301 0.67 0.981258
Target:  5'- ---nGGAGcACGGcGGAGGGAacggGAAGGg -3'
miRNA:   3'- caggCUUCuUGCCuCCUCCCU----CUUCC- -5'
9359 5' -54 NC_002512.2 + 193545 0.67 0.97915
Target:  5'- aGUCCGcGGGGuCGGgcgcugugguGGGAGGGGuGGGGa -3'
miRNA:   3'- -CAGGCuUCUU-GCC----------UCCUCCCUcUUCC- -5'
9359 5' -54 NC_002512.2 + 171840 0.67 0.97893
Target:  5'- -aCCGcGGGACGGuccggccgcggccGGGAGGGGGcGGa -3'
miRNA:   3'- caGGCuUCUUGCC-------------UCCUCCCUCuUCc -5'
9359 5' -54 NC_002512.2 + 210396 0.67 0.976871
Target:  5'- uUCCGAcgcgguggGGAACGcggcGGGGAGGcGAGGuccGGGa -3'
miRNA:   3'- cAGGCU--------UCUUGC----CUCCUCC-CUCU---UCC- -5'
9359 5' -54 NC_002512.2 + 173026 0.67 0.971773
Target:  5'- cUCgCGGuacGCGGAGGGGGGGGuguacGAGGc -3'
miRNA:   3'- cAG-GCUucuUGCCUCCUCCCUC-----UUCC- -5'
9359 5' -54 NC_002512.2 + 41266 0.67 0.970097
Target:  5'- -aCCGAAGAAcgaauCGGAGcAGGGAuauggcguccuugcgGAAGGa -3'
miRNA:   3'- caGGCUUCUU-----GCCUCcUCCCU---------------CUUCC- -5'
9359 5' -54 NC_002512.2 + 227 0.67 0.968941
Target:  5'- -aCCGAAGGGCaGGcGGGcGGGAaAAGGg -3'
miRNA:   3'- caGGCUUCUUG-CCuCCU-CCCUcUUCC- -5'
9359 5' -54 NC_002512.2 + 220311 0.67 0.968941
Target:  5'- -gCCGggGGGcCGGGGGccgggcuccGGGGGGccGGa -3'
miRNA:   3'- caGGCuuCUU-GCCUCC---------UCCCUCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.